SMTL ID : 2q5t.1

Full-length Cholix toxin from Vibrio Cholerae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: L.325, S.327 Ligands: EDO.7 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Ligands: EDO.4 Ligand excluded by PLIP

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: Q.371, P.484, V.485, P.486, E.495, W.594 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.371, A:V.485 Water bridges: A:D.375, A:D.375, A:N.490 EDO.4: 9 residues within 4Å: Chain A: Y.467, H.468, G.469, Y.501, V.502, A.503, A.509, Y.512 Ligands: CL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.469, A:G.469 Water bridges: A:Y.512, A:Y.512 EDO.5: 5 residues within 4Å: Chain A: W.497, Y.501, L.556, E.557, E.589 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.501 Water bridges: A:R.487 EDO.6: 7 residues within 4Å: Chain A: R.323, I.324, F.326, Y.373, P.385, E.386, S.389 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.323, A:S.389, A:S.389 Water bridges: A:R.323, A:E.386 EDO.7: 5 residues within 4Å: Chain A: F.326, R.370, N.374, N.490 Ligands: CL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.370, A:N.374 Water bridges: A:N.489 EDO.8: 5 residues within 4Å: Chain A: G.76, T.163, Q.166, W.167, N.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.77, A:N.172, A:N.172 EDO.9: 8 residues within 4Å: Chain A: H.210, T.211, H.283, L.290, S.399, N.420, E.422, R.481 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.210, A:S.399, A:N.420, A:R.481 EDO.10: 5 residues within 4Å: Chain A: R.424, E.460, G.461, Y.462, P.542 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.424, A:R.424, A:G.461 EDO.11: 3 residues within 4Å: Chain A: D.618, E.620, A.621 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jorgensen, R. et al., Cholix Toxin, a Novel ADP-ribosylating Factor from Vibrio cholerae. J.Biol.Chem. (2008)

Release Date

2008-02-12

Peptides

Cholix toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholix toxin

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