SMTL ID : 2q6o.1 (2 other biounits)

SalL-Y70T with SAM and Cl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: Y.72, T.75, W.129, Y.130, G.131 Ligands: SAM.2 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain B: Y.72, T.75, W.129, Y.130, G.131 Ligands: SAM.4 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain C: Y.72, T.75, W.129, Y.130, G.131 Ligands: SAM.6 Ligand excluded by PLIP

3 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 22 residues within 4Å: Chain A: D.11, V.12, A.18, F.45, T.70, V.71, Y.72, P.73, T.75, T.128, W.129 Chain B: D.183, F.186, N.188, W.190, F.228, S.242, L.250, N.251, Q.252, S.253 Ligands: CL.1 18 PLIP interactions: 9 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:D.183, B:N.188, B:S.242, B:L.250, B:Q.252, A:D.11, A:F.45, A:T.70, A:Y.72 Water bridges: B:S.242, B:L.250, A:E.17 pi-Stacking: B:F.228, B:F.228 Hydrophobic interactions: A:V.12, A:A.18, A:W.129 pi-Cation interactions: A:W.129 SAM.4: 22 residues within 4Å: Chain B: D.11, V.12, A.18, F.45, T.70, V.71, Y.72, P.73, T.75, T.128, W.129 Chain C: D.183, F.186, N.188, W.190, F.228, S.242, L.250, N.251, Q.252, S.253 Ligands: CL.3 18 PLIP interactions: 9 interactions with chain B, 9 interactions with chain C Hydrophobic interactions: B:V.12, B:A.18, B:W.129 Hydrogen bonds: B:D.11, B:F.45, B:T.70, B:Y.72, C:D.183, C:N.188, C:S.242, C:L.250, C:Q.252 Water bridges: B:E.17, C:S.242, C:L.250 pi-Cation interactions: B:W.129 pi-Stacking: C:F.228, C:F.228 SAM.6: 22 residues within 4Å: Chain A: D.183, F.186, N.188, W.190, F.228, S.242, L.250, N.251, Q.252, S.253 Chain C: D.11, V.12, A.18, F.45, T.70, V.71, Y.72, P.73, T.75, T.128, W.129 Ligands: CL.5 18 PLIP interactions: 9 interactions with chain C, 9 interactions with chain A Hydrophobic interactions: C:V.12, C:A.18, C:W.129 Hydrogen bonds: C:D.11, C:F.45, C:T.70, C:Y.72, A:D.183, A:N.188, A:S.242, A:L.250, A:Q.252 Water bridges: C:E.17, A:S.242, A:L.250 pi-Cation interactions: C:W.129 pi-Stacking: A:F.228, A:F.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eustaquio, A.S. et al., Discovery and characterization of a marine bacterial SAM-dependent chlorinase. Nat.Chem.Biol. (2008)

Release Date

2007-12-11

Peptides

Hypothetical Protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Hypothetical Protein

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