SMTL ID : 2q6q.1

Crystal structure of Spc42p, a critical component of spindle pole body in budding yeast

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

3 x CO: COBALT (II) ION(Non-covalent)

CO.1: 3 residues within 4Å: Chain A: E.34, D.38 Ligands: CO.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.34, A:D.38, H2O.2 CO.2: 3 residues within 4Å: Chain A: E.34, D.38 Ligands: CO.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.34, A:D.38 CO.4: 2 residues within 4Å: Chain B: K.41, D.45 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.45, H2O.4, H2O.5, H2O.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.13, N.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zizlsperger, N. et al., Analysis of coiled-coil interactions between core proteins of the spindle pole body. Biochemistry (2008)

Release Date

2008-05-13

Peptides

Spindle pole body component SPC42: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spindle pole body component SPC42