SMTL ID : 2q71.1

Uroporphyrinogen Decarboxylase G168R single mutant enzyme in complex with coproporphyrinogen-III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CP3: COPROPORPHYRINOGEN III(Non-covalent)

CP3.1: 20 residues within 4Å: Chain A: R.27, Q.28, A.29, G.30, R.31, F.36, F.45, I.72, I.73, F.74, S.75, D.76, I.77, M.90, P.96, F.144, Y.154, F.207, S.209, H.329 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:F.36, A:F.45, A:F.45, A:I.72, A:F.74, A:I.77, A:F.144, A:F.144, A:F.207, A:F.207, A:F.207 Hydrogen bonds: A:R.27, A:R.27, A:R.27, A:A.29, A:R.31, A:D.76, A:D.76, A:D.76, A:D.76, A:Y.154, A:S.209, A:S.209 Water bridges: A:R.31, A:Y.32, A:H.329, A:G.330 Salt bridges: A:R.27, A:R.27, A:R.31, A:H.329 pi-Cation interactions: A:R.27, A:R.27, A:R.27 CP3.2: 20 residues within 4Å: Chain B: R.27, Q.28, A.29, G.30, R.31, F.36, F.45, I.72, I.73, F.74, S.75, D.76, I.77, M.90, P.96, F.144, Y.154, F.207, S.209, H.329 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:F.36, B:F.45, B:F.45, B:I.72, B:F.74, B:I.77, B:F.144, B:F.144, B:F.207, B:F.207, B:F.207 Hydrogen bonds: B:R.27, B:R.27, B:R.27, B:A.29, B:R.31, B:D.76, B:D.76, B:D.76, B:D.76, B:D.76, B:S.209, B:S.209 Water bridges: B:R.31, B:Y.32, B:G.330 Salt bridges: B:R.27, B:R.27, B:R.31, B:H.329 pi-Cation interactions: B:R.27, B:R.27, B:R.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phillips, J.D. et al., Two Novel Uropophyrinogen Decarboxylase (URO-D) Mutations Causing Hepatoerythropoietic Porphyria (HEP). Transl.Res. (2007)

Release Date

2007-06-19

Peptides

Uroporphyrinogen decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uroporphyrinogen decarboxylase

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