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SMTL ID : 2q78.2
(4 other biounits)
Crystal structure of a thioesterase-like protein (tm0581) from thermotoga maritima msb8 at 2.20 A resolution
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
2 x
MLC
:
MALONYL-COENZYME A
(Non-covalent)
MLC.1:
27 residues within 4Å:
Chain A:
H.12
,
M.13
,
M.14
,
F.16
,
H.58
,
Y.73
,
V.76
,
V.77
,
V.78
,
N.106
,
R.107
,
A.129
,
V.131
,
P.132
,
K.135
,
L.136
,
L.139
Chain B:
W.36
,
E.38
,
V.48
,
A.49
,
T.50
,
S.51
,
H.84
,
V.85
,
K.86
,
A.87
18
PLIP interactions
:
6 interactions with chain B
,
12 interactions with chain A
Hydrogen bonds:
B:T.50
,
B:T.50
,
B:S.51
,
B:H.84
,
B:A.87
,
A:V.77
,
A:N.106
Water bridges:
B:V.85
,
A:N.106
,
A:N.106
,
A:R.107
Hydrophobic interactions:
A:V.78
,
A:A.129
,
A:L.139
Salt bridges:
A:H.58
,
A:R.107
,
A:R.107
,
A:K.135
MLC.3:
26 residues within 4Å:
Chain A:
W.36
,
E.38
,
V.48
,
A.49
,
T.50
,
S.51
,
H.84
,
V.85
,
K.86
,
A.87
Chain B:
M.13
,
M.14
,
F.16
,
H.58
,
V.76
,
V.77
,
V.78
,
G.105
,
N.106
,
R.107
,
A.129
,
I.130
,
V.131
,
P.132
,
K.135
,
L.139
15
PLIP interactions
:
9 interactions with chain B
,
6 interactions with chain A
Hydrophobic interactions:
B:V.78
,
B:A.129
,
B:L.139
Hydrogen bonds:
B:V.77
,
B:N.106
,
A:T.50
,
A:T.50
,
A:S.51
,
A:H.84
,
A:A.87
Water bridges:
B:R.138
,
A:V.85
Salt bridges:
B:H.58
,
B:R.107
,
B:R.107
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.2:
3 residues within 4Å:
Chain B:
R.99
,
V.101
,
R.111
Ligand excluded by PLIP
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Joint Center for Structural Genomics (JCSG), Crystal structure of Uncharacterized protein TM0581 (TM0581) from Thermotoga maritima at 2.20 A resolution. To be published
Release Date
2007-06-19
Peptides
Uncharacterized protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Secondary Structure
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Fade Mismatches
Enhance Mismatches
Chain
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Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
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3D Viewer
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Uncharacterized protein
Related Entries With Identical Sequence
2q78.1
|
2q78.3
|
2q78.4
|
2q78.5
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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Extreme