SMTL ID : 2q83.2 (1 other biounit)

Crystal structure of ytaA (2635576) from Bacillus subtilis at 2.50 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.157, H.161 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.157, A:H.161 SO4.2: 2 residues within 4Å: Chain A: K.69, K.154 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.251 Salt bridges: A:K.69, A:K.154

1 x ADN: ADENOSINE(Non-covalent)

ADN.3: 9 residues within 4Å: Chain A: I.40, C.59, P.88, D.111, W.112, I.113, G.232, L.235, I.245 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.111, A:I.113, A:G.232 pi-Stacking: A:W.112

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 3 residues within 4Å: Chain A: K.131, S.287, R.288 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.287 Salt bridges: A:K.131, A:K.131, A:K.131, A:R.288, A:R.288

1 x UNL: UNKNOWN LIGAND

UNL.5: 7 residues within 4Å: Chain A: K.154, H.161, R.165, R.257, R.260, K.261, Y.307 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.154, A:H.161, A:R.165, A:R.165, A:R.257, A:R.257, A:R.257, A:R.260, A:R.260, A:K.261

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: N.93, K.95, S.100, H.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.93, A:K.95, A:H.102 EDO.7: 2 residues within 4Å: Chain A: S.97, Y.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.99, A:Y.99 EDO.8: 6 residues within 4Å: Chain A: R.205, Q.208, S.209, Q.297, I.301, I.346 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.205, A:Q.208 EDO.9: 3 residues within 4Å: Chain A: Q.208, S.209, T.210 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: L.120, D.274, T.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.120, A:L.266, A:D.274 EDO.11: 2 residues within 4Å: Chain A: R.314, R.319 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.314, A:R.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheeff, E.D. et al., Genomics, evolution, and crystal structure of a new family of bacterial spore kinases. Proteins (2010)

Release Date

2007-06-26

Peptides

YtaA protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YtaA protein

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