SMTL ID : 2q86.1 (1 other biounit)

Structure of the mouse invariant NKT cell receptor Valpha14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 6 residues within 4Å: Chain A: Q.3, E.5, N.24, Y.25, S.26, A.70 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain B: W.156, Q.203, Q.205, T.224, N.226 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.224 Hydrogen bonds: B:Q.203, B:Q.205 Water bridges: B:N.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zajonc, D.M. et al., Crystal Structures of Mouse CD1d-iGb3 Complex and its Cognate Valpha14 T Cell Receptor Suggest a Model for Dual Recognition of Foreign and Self Glycolipids. J.Mol.Biol. (2008)

Release Date

2008-04-01

Peptides

Valpha14 TCR: A
Vbeta8.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Valpha14 TCR

Vbeta8.2

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