SMTL ID : 2q8k.1

The crystal structure of Ebp1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.40, P.344 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.40, A:F.345 Salt bridges: A:R.40 SO4.2: 3 residues within 4Å: Chain A: H.154, R.339, G.343 14 PLIP interactions: 14 interactions with chain A Water bridges: A:H.154, A:H.154, A:R.339, A:R.339, A:R.339, A:R.339, A:R.339, A:R.339, A:S.342, A:F.345, A:F.345, A:F.345 Salt bridges: A:H.154, A:R.339 SO4.3: 4 residues within 4Å: Chain A: K.198, V.201, G.204, E.205 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.205 Water bridges: A:D.203, A:K.206 Salt bridges: A:K.198 SO4.4: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.270 SO4.5: 3 residues within 4Å: Chain A: K.265, M.266, K.267 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.267 Water bridges: A:T.268, A:R.270, A:R.270, A:R.270 Salt bridges: A:K.267

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: I.87, S.88, V.89, C.92, F.96, Y.105, Y.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.87, A:V.89, A:Y.316 Water bridges: A:Q.249 GOL.7: 5 residues within 4Å: Chain A: K.69, I.70, F.71, K.72, K.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69, A:K.72, A:K.73 Water bridges: A:F.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kowalinski, E. et al., The crystal structure of Ebp1 reveals a methionine aminopeptidase fold as binding platform for multiple interactions. Febs Lett. (2007)

Release Date

2007-09-25

Peptides

Proliferation-associated protein 2G4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proliferation-associated protein 2G4