SMTL ID : 2q8n.1

Crystal structure of Glucose-6-phosphate isomerase (EC 5.3.1.9) (TM1385) from Thermotoga maritima at 1.82 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.150, S.152, T.153, K.434 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.150, A:T.153 Water bridges: A:A.154 Salt bridges: A:K.434 SO4.2: 2 residues within 4Å: Chain A: T.109, R.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.110 Water bridges: A:T.109, A:E.111 SO4.6: 1 residues within 4Å: Chain B: R.199 2 PLIP interactions: 2 interactions with chain B Water bridges: B:W.74 Salt bridges: B:R.199 SO4.7: 4 residues within 4Å: Chain B: S.150, S.152, T.153, K.434 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.150, B:S.150 Water bridges: B:A.154 Salt bridges: B:K.434 SO4.10: 4 residues within 4Å: Chain C: S.150, S.152, T.153, K.434 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.150, C:S.150 Water bridges: C:A.154, C:A.154 Salt bridges: C:K.434 SO4.11: 2 residues within 4Å: Chain C: T.109, R.110 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.110 Water bridges: C:T.109, C:E.111 SO4.14: 4 residues within 4Å: Chain D: S.150, S.152, T.153, K.434 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.150, D:T.153 Water bridges: D:A.154 Salt bridges: D:K.434 SO4.15: 2 residues within 4Å: Chain D: T.109, R.110 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.110 Water bridges: D:T.109, D:E.111 SO4.19: 1 residues within 4Å: Chain E: R.199 2 PLIP interactions: 2 interactions with chain E Water bridges: E:W.74 Salt bridges: E:R.199 SO4.20: 4 residues within 4Å: Chain E: S.150, S.152, T.153, K.434 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.150, E:S.150 Water bridges: E:A.154 Salt bridges: E:K.434 SO4.23: 4 residues within 4Å: Chain F: S.150, S.152, T.153, K.434 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:S.150, F:S.150 Water bridges: F:A.154, F:A.154 Salt bridges: F:K.434 SO4.24: 2 residues within 4Å: Chain F: T.109, R.110 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.110 Water bridges: F:T.109, F:E.111

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: V.313, K.314 Chain B: V.313, K.314 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.199 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: R.199, S.200 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: K.314 Chain F: V.313, K.314 Ligands: CL.25 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain D: V.313, K.314 Chain E: V.313, K.314 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain D: R.199 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain E: R.199, S.200 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain C: V.313, K.314 Chain F: K.314 Ligands: CL.12 Ligand excluded by PLIP

6 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.5: 4 residues within 4Å: Chain A: P.332, N.333, R.387 Chain B: F.307 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.333, A:N.333 Water bridges: A:N.385, A:R.387 2PE.9: 21 residues within 4Å: Chain A: L.94, H.97, L.103, N.106, E.107, V.119, F.120, V.121, L.129, S.132, V.133 Chain B: L.94, H.97, L.103, N.106, E.107, V.119, F.120, V.121, L.129, S.132 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:V.119, A:V.121, A:S.132, B:H.97, B:N.106, B:V.121 Water bridges: B:R.136 2PE.13: 21 residues within 4Å: Chain C: L.94, H.97, Y.98, L.103, V.119, F.120, V.121, L.129, S.132, V.133 Chain F: L.94, H.97, L.103, E.107, V.119, F.120, V.121, L.129, S.132, V.133 Ligands: 2PE.26 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain C Hydrogen bonds: F:H.97, F:N.106, F:V.121, C:H.97, C:N.106, C:V.121, C:S.132 Water bridges: F:R.136 2PE.18: 4 residues within 4Å: Chain D: P.332, N.333, R.387 Chain E: F.307 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.333, D:N.333 Water bridges: D:N.385, D:R.387 2PE.22: 21 residues within 4Å: Chain D: L.94, H.97, L.103, N.106, E.107, V.119, F.120, V.121, L.129, S.132, V.133 Chain E: L.94, H.97, L.103, N.106, E.107, V.119, F.120, V.121, L.129, S.132 7 PLIP interactions: 3 interactions with chain D, 4 interactions with chain E Hydrogen bonds: D:V.119, D:V.121, D:S.132, E:H.97, E:N.106, E:V.121 Water bridges: E:R.136 2PE.26: 21 residues within 4Å: Chain C: L.94, H.97, L.103, E.107, V.119, F.120, V.121, L.129, S.132, V.133 Chain F: L.94, H.97, Y.98, L.103, V.119, F.120, V.121, L.129, S.132, V.133 Ligands: 2PE.13 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain F Hydrogen bonds: C:H.97, C:N.106, C:V.121, F:H.97, F:Y.98, F:N.106, F:V.121, F:S.132 Water bridges: C:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Glucose-6-phosphate isomerase (EC 5.3.1.9) (TM1385) from Thermotoga maritima at 1.82 A resolution. To be published

Release Date

2007-06-19

Peptides

Glucose-6-phosphate isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Glucose-6-phosphate isomerase