SMTL ID : 2q9a.3 (3 other biounits)

Structure of Apo FTSY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: V.110, N.111, G.112, V.113, G.114, K.115, T.116 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.112, A:V.113, A:G.114, A:K.115, A:T.116 Water bridges: A:N.111, A:N.111, A:G.114, A:T.116, A:T.117, A:D.139, A:D.139 SO4.2: 5 residues within 4Å: Chain A: G.45, L.46, S.47 Chain B: R.17, K.262 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:R.17, B:K.262, A:A.48 Salt bridges: B:R.17, B:K.262 Hydrogen bonds: A:L.46, A:S.47 SO4.3: 6 residues within 4Å: Chain A: H.197, T.198, K.199 Chain B: R.142, A.143, R.195 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.143, A:K.199 Water bridges: B:A.144 Salt bridges: B:R.195, A:K.199 SO4.4: 5 residues within 4Å: Chain A: R.195, L.196, H.197 Chain B: N.111, R.195 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain A Salt bridges: B:R.195, A:R.195, A:H.197 Hydrogen bonds: A:H.197, A:H.197 Water bridges: A:N.111, A:R.195, A:R.195, A:R.195, A:L.196, A:L.196 SO4.5: 3 residues within 4Å: Chain A: S.150, K.154, Q.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.150, A:Q.162 Salt bridges: A:K.154 SO4.12: 8 residues within 4Å: Chain B: V.110, N.111, G.112, V.113, G.114, K.115, T.116, R.142 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.111, B:G.112, B:V.113, B:G.114, B:K.115, B:T.116, B:R.142 Water bridges: B:G.109, B:V.110, B:T.117, B:R.142 SO4.13: 1 residues within 4Å: Chain B: K.132 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.132 SO4.14: 2 residues within 4Å: Chain B: R.183, Y.185 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.185, B:Y.185 Salt bridges: B:R.183 SO4.15: 2 residues within 4Å: Chain B: P.159, R.183 3 PLIP interactions: 3 interactions with chain B Water bridges: B:V.160, B:V.160 Salt bridges: B:R.183

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: Q.234, E.238 Chain B: V.231, K.262 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.238, B:T.232 EDO.7: 5 residues within 4Å: Chain A: R.17, K.262 Chain B: G.45, L.46, S.47 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:L.46, B:S.47, B:S.47, A:R.17, A:R.17, A:K.262 Water bridges: B:A.48 EDO.8: 4 residues within 4Å: Chain A: H.244, L.273, K.274, V.275 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: K.210, A.246, V.247, G.248 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.210 EDO.10: 4 residues within 4Å: Chain A: K.210, A.214, E.220, P.221 No protein-ligand interaction detected (PLIP) EDO.11: 5 residues within 4Å: Chain A: K.207, K.210, R.211, A.246 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.211 EDO.16: 1 residues within 4Å: Chain B: S.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.157 EDO.17: 4 residues within 4Å: Chain B: E.223, T.250, P.276, K.278 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.223, B:K.278 EDO.18: 6 residues within 4Å: Chain B: K.210, P.221, V.224, V.247, G.248, T.250 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.210, B:P.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reyes, C.L. et al., X-ray Structures of the Signal Recognition Particle Receptor Reveal Targeting Cycle Intermediates. Plos One (2007)

Release Date

2007-07-03

Peptides

Cell division protein ftsY: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division protein ftsY

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