SMTL ID : 2q9r.1

CRYSTAL STRUCTURE OF a DUF416 family protein (SBAL_3149) FROM SHEWANELLA BALTICA OS155 AT 1.91 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: C.42, F.87, E.88, A.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.88, A:A.89 Water bridges: A:E.88 SO4.2: 6 residues within 4Å: Chain A: F.68, N.69, I.70, D.71, Q.110 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.69, A:I.70, A:D.71, A:Q.110 SO4.11: 4 residues within 4Å: Chain B: C.42, F.87, E.88, A.89 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.88, B:A.89 SO4.12: 6 residues within 4Å: Chain B: F.68, N.69, I.70, D.71, Q.110 Ligands: GOL.15 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.69, B:I.70, B:D.71, B:Q.110

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: E.157 Chain B: E.157 Ligands: ACT.13 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:V.154, A:E.157, B:V.154 ACT.13: 3 residues within 4Å: Chain A: E.157 Chain B: E.157 Ligands: ACT.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:V.154, B:E.157, A:V.154

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.4: 11 residues within 4Å: Chain A: N.34, L.37, F.38, G.91, P.94, Y.131, I.195, I.197 Chain B: S.136, F.148, H.152 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.37, A:L.37, A:P.94, A:I.195, A:I.197, A:I.197, B:F.148 Water bridges: A:G.91, A:Y.131 Salt bridges: B:H.152 BEZ.14: 11 residues within 4Å: Chain A: S.136, F.148, H.152 Chain B: N.34, L.37, F.38, G.91, P.94, Y.131, I.195, I.197 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.37, B:L.37, B:P.94, B:I.195, B:I.197, B:I.197, A:F.148 Water bridges: B:G.91 Salt bridges: A:H.152

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: S.60, L.66, K.67, F.68, I.70, I.109 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.60, A:F.68, A:F.68 GOL.6: 4 residues within 4Å: Chain A: F.8, K.159, N.163 Ligands: GOL.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.162, A:N.163 GOL.7: 5 residues within 4Å: Chain A: L.161, S.164, L.165, L.183, D.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.164, A:D.186, A:D.186 GOL.8: 5 residues within 4Å: Chain A: L.37, E.40, V.199 Chain B: D.147, F.148 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.40, A:V.199 Water bridges: B:F.148 GOL.9: 4 residues within 4Å: Chain A: F.44, G.45, D.79, N.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.45, A:N.80 Water bridges: A:N.80 GOL.10: 5 residues within 4Å: Chain A: A.129, D.146, F.150, M.155 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) GOL.15: 7 residues within 4Å: Chain B: S.60, L.66, K.67, F.68, I.70, I.109 Ligands: SO4.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.60, B:F.68, B:F.68 GOL.16: 4 residues within 4Å: Chain B: F.8, K.159, N.163 Ligands: GOL.20 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.162, B:N.163 GOL.17: 5 residues within 4Å: Chain B: L.161, S.164, L.165, L.183, D.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.164, B:D.186 GOL.18: 5 residues within 4Å: Chain A: D.147, F.148 Chain B: L.37, E.40, V.199 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.40, B:V.199 Water bridges: A:D.147, A:F.148 GOL.19: 4 residues within 4Å: Chain B: F.44, G.45, D.79, N.80 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.45, B:N.80 Water bridges: B:N.80 GOL.20: 5 residues within 4Å: Chain B: A.129, D.146, F.150, M.155 Ligands: GOL.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function (YP_001051499.1) from Shewanella baltica OS155 at 1.91 A resolution. To be published

Release Date

2007-06-26

Peptides

Protein of unknown function: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein of unknown function