SMTL ID : 2q9t.1

High-resolution structure of the DING protein from Pseudomonas fluorescens

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: A.8, T.9, L.10, G.32, S.33, D.63, R.142, S.146, G.147, T.148 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.9, A:L.10, A:S.33, A:S.33, A:D.63, A:G.147, A:T.148, A:T.148 Salt bridges: A:R.142

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: V.111, K.159 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.159 Salt bridges: A:K.159 ACT.3: 2 residues within 4Å: Chain A: T.170, T.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.170, A:T.171 Water bridges: A:T.170

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: T.339 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.339, A:T.339 Water bridges: A:T.339, A:A.340 SO4.5: 3 residues within 4Å: Chain A: M.1, D.2, K.55 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.2 Water bridges: A:M.1, A:N.4, A:N.4, A:K.55 Salt bridges: A:K.55

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: A.303, P.370, L.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.368, A:L.371 Water bridges: A:L.372 EDO.7: 3 residues within 4Å: Chain A: A.185, V.186, A.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.185, A:A.187 Water bridges: A:A.187, A:A.187 EDO.8: 2 residues within 4Å: Chain A: L.181, A.183 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.184 EDO.9: 1 residues within 4Å: Chain A: R.346 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.346 EDO.10: 3 residues within 4Å: Chain A: D.108, R.228, Q.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.108, A:R.228, A:Q.238

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 6 residues within 4Å: Chain A: P.98, F.99, N.100, L.198, A.199, K.225 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.99, A:K.225, A:K.225 Water bridges: A:M.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahn, S. et al., Structure-function relationships in a bacterial DING protein. Febs Lett. (2007)

Release Date

2008-06-17

Peptides

DING: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DING