SMTL ID : 2qa0.3 (5 other biounits)

Structure of Adeno-Associated virus serotype 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-pentamer

Ligands

5 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: Y.484, S.486, D.495, F.496, R.508 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.486, A:R.508 Water bridges: A:D.495 NA.2: 5 residues within 4Å: Chain B: Y.484, S.486, D.495, F.496, R.508 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.484, B:S.486, B:R.508 Water bridges: B:D.495 NA.3: 5 residues within 4Å: Chain C: Y.484, S.486, D.495, F.496, R.508 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.486, C:R.508 Water bridges: C:D.495 NA.4: 5 residues within 4Å: Chain D: Y.484, S.486, D.495, F.496, R.508 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.486, D:R.508 Water bridges: D:D.495 NA.5: 5 residues within 4Å: Chain E: Y.484, S.486, D.495, F.496, R.508 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.484, E:R.508 Water bridges: E:D.495

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nam, H.J. et al., Structure of adeno-associated virus serotype 8, a gene therapy vector. J.Virol. (2007)

Release Date

2008-04-08

Peptides

Capsid protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Capsid protein

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