SMTL ID : 2qaa.3 (2 other biounits)

Crystal structure of the second tetrahedral intermediates of SGPB at pH 7.3

SO4.1: 5 residues within 4Å: Chain A: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.100, G.105, T.106 Ligands: EDO.17 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain B: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: N.119, G.121, G.122 Chain C: T.92 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: R.100, G.105, T.106 Chain W: G.123 Ligands: GOL.28 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain C: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain C: R.100, G.105, T.106 Ligands: EDO.46 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain D: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain A: T.92 Chain D: N.119, G.121, G.122 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain D: R.100, G.105, T.106 Chain Q: G.123 Ligands: GOL.57 Ligand excluded by PLIP SO4.59: 5 residues within 4Å: Chain E: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.60: 4 residues within 4Å: Chain E: R.100, G.105, T.106 Ligands: EDO.75 Ligand excluded by PLIP SO4.65: 6 residues within 4Å: Chain F: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain F: N.119, G.121, G.122 Chain G: T.92 Ligand excluded by PLIP SO4.67: 5 residues within 4Å: Chain F: R.100, G.105, T.106 Chain U: G.123 Ligands: GOL.86 Ligand excluded by PLIP SO4.88: 5 residues within 4Å: Chain G: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.89: 4 residues within 4Å: Chain G: R.100, G.105, T.106 Ligands: EDO.104 Ligand excluded by PLIP SO4.94: 6 residues within 4Å: Chain H: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.95: 4 residues within 4Å: Chain E: T.92 Chain H: N.119, G.121, G.122 Ligand excluded by PLIP SO4.96: 5 residues within 4Å: Chain H: R.100, G.105, T.106 Chain S: G.123 Ligands: GOL.115 Ligand excluded by PLIP SO4.117: 5 residues within 4Å: Chain I: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.118: 4 residues within 4Å: Chain I: R.100, G.105, T.106 Ligands: EDO.133 Ligand excluded by PLIP SO4.123: 6 residues within 4Å: Chain J: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.124: 4 residues within 4Å: Chain J: N.119, G.121, G.122 Chain K: T.92 Ligand excluded by PLIP SO4.125: 5 residues within 4Å: Chain G: G.123 Chain J: R.100, G.105, T.106 Ligands: GOL.144 Ligand excluded by PLIP SO4.146: 5 residues within 4Å: Chain K: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.147: 4 residues within 4Å: Chain K: R.100, G.105, T.106 Ligands: EDO.162 Ligand excluded by PLIP SO4.152: 6 residues within 4Å: Chain L: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.153: 4 residues within 4Å: Chain I: T.92 Chain L: N.119, G.121, G.122 Ligand excluded by PLIP SO4.154: 5 residues within 4Å: Chain A: G.123 Chain L: R.100, G.105, T.106 Ligands: GOL.173 Ligand excluded by PLIP SO4.175: 5 residues within 4Å: Chain M: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.176: 4 residues within 4Å: Chain M: R.100, G.105, T.106 Ligands: EDO.191 Ligand excluded by PLIP SO4.181: 6 residues within 4Å: Chain N: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.182: 4 residues within 4Å: Chain N: N.119, G.121, G.122 Chain O: T.92 Ligand excluded by PLIP SO4.183: 5 residues within 4Å: Chain E: G.123 Chain N: R.100, G.105, T.106 Ligands: GOL.202 Ligand excluded by PLIP SO4.204: 5 residues within 4Å: Chain O: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.205: 4 residues within 4Å: Chain O: R.100, G.105, T.106 Ligands: EDO.220 Ligand excluded by PLIP SO4.210: 6 residues within 4Å: Chain P: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.211: 4 residues within 4Å: Chain M: T.92 Chain P: N.119, G.121, G.122 Ligand excluded by PLIP SO4.212: 5 residues within 4Å: Chain C: G.123 Chain P: R.100, G.105, T.106 Ligands: GOL.231 Ligand excluded by PLIP SO4.233: 5 residues within 4Å: Chain Q: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.234: 4 residues within 4Å: Chain Q: R.100, G.105, T.106 Ligands: EDO.249 Ligand excluded by PLIP SO4.239: 6 residues within 4Å: Chain R: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.240: 4 residues within 4Å: Chain R: N.119, G.121, G.122 Chain S: T.92 Ligand excluded by PLIP SO4.241: 5 residues within 4Å: Chain O: G.123 Chain R: R.100, G.105, T.106 Ligands: GOL.260 Ligand excluded by PLIP SO4.262: 5 residues within 4Å: Chain S: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.263: 4 residues within 4Å: Chain S: R.100, G.105, T.106 Ligands: EDO.278 Ligand excluded by PLIP SO4.268: 6 residues within 4Å: Chain T: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.269: 4 residues within 4Å: Chain Q: T.92 Chain T: N.119, G.121, G.122 Ligand excluded by PLIP SO4.270: 5 residues within 4Å: Chain I: G.123 Chain T: R.100, G.105, T.106 Ligands: GOL.289 Ligand excluded by PLIP SO4.291: 5 residues within 4Å: Chain U: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.292: 4 residues within 4Å: Chain U: R.100, G.105, T.106 Ligands: EDO.307 Ligand excluded by PLIP SO4.297: 6 residues within 4Å: Chain V: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.298: 4 residues within 4Å: Chain V: N.119, G.121, G.122 Chain W: T.92 Ligand excluded by PLIP SO4.299: 5 residues within 4Å: Chain M: G.123 Chain V: R.100, G.105, T.106 Ligands: GOL.318 Ligand excluded by PLIP SO4.320: 5 residues within 4Å: Chain W: T.112, R.131, T.132, N.133, T.167 Ligand excluded by PLIP SO4.321: 4 residues within 4Å: Chain W: R.100, G.105, T.106 Ligands: EDO.336 Ligand excluded by PLIP SO4.326: 6 residues within 4Å: Chain X: T.112, R.131, T.132, N.133, G.166, T.167 Ligand excluded by PLIP SO4.327: 4 residues within 4Å: Chain U: T.92 Chain X: N.119, G.121, G.122 Ligand excluded by PLIP SO4.328: 5 residues within 4Å: Chain K: G.123 Chain X: R.100, G.105, T.106 Ligands: GOL.347 Ligand excluded by PLIP

CL.3: 3 residues within 4Å: Chain A: G.23 Chain C: T.86 Ligands: EDO.19 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Y.8, R.13 Ligands: ACY.24 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: Y.26 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: G.148, T.149 Chain D: N.61 Ligands: ACY.25 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: G.12, R.47 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: R.13 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: T.39, T.40 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: H.107, C.162 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: S.55, I.66 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain A: T.86 Chain C: G.23 Ligands: EDO.48 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain C: Y.8, R.13 Ligands: ACY.53 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain C: Y.26 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain B: N.61 Chain C: G.148, T.149 Ligands: ACY.54 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain D: G.12, R.47 Ligand excluded by PLIP CL.40: 1 residues within 4Å: Chain D: R.13 Ligand excluded by PLIP CL.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain D: T.39, T.40 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain D: H.107, C.162 Ligand excluded by PLIP CL.44: 2 residues within 4Å: Chain D: S.55, I.66 Ligand excluded by PLIP CL.61: 3 residues within 4Å: Chain E: G.23 Chain G: T.86 Ligands: EDO.77 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain E: Y.8, R.13 Ligands: ACY.82 Ligand excluded by PLIP CL.63: 1 residues within 4Å: Chain E: Y.26 Ligand excluded by PLIP CL.64: 4 residues within 4Å: Chain E: G.148, T.149 Chain H: N.61 Ligands: ACY.83 Ligand excluded by PLIP CL.68: 2 residues within 4Å: Chain F: G.12, R.47 Ligand excluded by PLIP CL.69: 1 residues within 4Å: Chain F: R.13 Ligand excluded by PLIP CL.70: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.71: 2 residues within 4Å: Chain F: T.39, T.40 Ligand excluded by PLIP CL.72: 2 residues within 4Å: Chain F: H.107, C.162 Ligand excluded by PLIP CL.73: 2 residues within 4Å: Chain F: S.55, I.66 Ligand excluded by PLIP CL.90: 3 residues within 4Å: Chain E: T.86 Chain G: G.23 Ligands: EDO.106 Ligand excluded by PLIP CL.91: 3 residues within 4Å: Chain G: Y.8, R.13 Ligands: ACY.111 Ligand excluded by PLIP CL.92: 1 residues within 4Å: Chain G: Y.26 Ligand excluded by PLIP CL.93: 4 residues within 4Å: Chain F: N.61 Chain G: G.148, T.149 Ligands: ACY.112 Ligand excluded by PLIP CL.97: 2 residues within 4Å: Chain H: G.12, R.47 Ligand excluded by PLIP CL.98: 1 residues within 4Å: Chain H: R.13 Ligand excluded by PLIP CL.99: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.100: 2 residues within 4Å: Chain H: T.39, T.40 Ligand excluded by PLIP CL.101: 2 residues within 4Å: Chain H: H.107, C.162 Ligand excluded by PLIP CL.102: 2 residues within 4Å: Chain H: S.55, I.66 Ligand excluded by PLIP CL.119: 3 residues within 4Å: Chain I: G.23 Chain K: T.86 Ligands: EDO.135 Ligand excluded by PLIP CL.120: 3 residues within 4Å: Chain I: Y.8, R.13 Ligands: ACY.140 Ligand excluded by PLIP CL.121: 1 residues within 4Å: Chain I: Y.26 Ligand excluded by PLIP CL.122: 4 residues within 4Å: Chain I: G.148, T.149 Chain L: N.61 Ligands: ACY.141 Ligand excluded by PLIP CL.126: 2 residues within 4Å: Chain J: G.12, R.47 Ligand excluded by PLIP CL.127: 1 residues within 4Å: Chain J: R.13 Ligand excluded by PLIP CL.128: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.129: 2 residues within 4Å: Chain J: T.39, T.40 Ligand excluded by PLIP CL.130: 2 residues within 4Å: Chain J: H.107, C.162 Ligand excluded by PLIP CL.131: 2 residues within 4Å: Chain J: S.55, I.66 Ligand excluded by PLIP CL.148: 3 residues within 4Å: Chain I: T.86 Chain K: G.23 Ligands: EDO.164 Ligand excluded by PLIP CL.149: 3 residues within 4Å: Chain K: Y.8, R.13 Ligands: ACY.169 Ligand excluded by PLIP CL.150: 1 residues within 4Å: Chain K: Y.26 Ligand excluded by PLIP CL.151: 4 residues within 4Å: Chain J: N.61 Chain K: G.148, T.149 Ligands: ACY.170 Ligand excluded by PLIP CL.155: 2 residues within 4Å: Chain L: G.12, R.47 Ligand excluded by PLIP CL.156: 1 residues within 4Å: Chain L: R.13 Ligand excluded by PLIP CL.157: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.158: 2 residues within 4Å: Chain L: T.39, T.40 Ligand excluded by PLIP CL.159: 2 residues within 4Å: Chain L: H.107, C.162 Ligand excluded by PLIP CL.160: 2 residues within 4Å: Chain L: S.55, I.66 Ligand excluded by PLIP CL.177: 3 residues within 4Å: Chain M: G.23 Chain O: T.86 Ligands: EDO.193 Ligand excluded by PLIP CL.178: 3 residues within 4Å: Chain M: Y.8, R.13 Ligands: ACY.198 Ligand excluded by PLIP CL.179: 1 residues within 4Å: Chain M: Y.26 Ligand excluded by PLIP CL.180: 4 residues within 4Å: Chain M: G.148, T.149 Chain P: N.61 Ligands: ACY.199 Ligand excluded by PLIP CL.184: 2 residues within 4Å: Chain N: G.12, R.47 Ligand excluded by PLIP CL.185: 1 residues within 4Å: Chain N: R.13 Ligand excluded by PLIP CL.186: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.187: 2 residues within 4Å: Chain N: T.39, T.40 Ligand excluded by PLIP CL.188: 2 residues within 4Å: Chain N: H.107, C.162 Ligand excluded by PLIP CL.189: 2 residues within 4Å: Chain N: S.55, I.66 Ligand excluded by PLIP CL.206: 3 residues within 4Å: Chain M: T.86 Chain O: G.23 Ligands: EDO.222 Ligand excluded by PLIP CL.207: 3 residues within 4Å: Chain O: Y.8, R.13 Ligands: ACY.227 Ligand excluded by PLIP CL.208: 1 residues within 4Å: Chain O: Y.26 Ligand excluded by PLIP CL.209: 4 residues within 4Å: Chain N: N.61 Chain O: G.148, T.149 Ligands: ACY.228 Ligand excluded by PLIP CL.213: 2 residues within 4Å: Chain P: G.12, R.47 Ligand excluded by PLIP CL.214: 1 residues within 4Å: Chain P: R.13 Ligand excluded by PLIP CL.215: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.216: 2 residues within 4Å: Chain P: T.39, T.40 Ligand excluded by PLIP CL.217: 2 residues within 4Å: Chain P: H.107, C.162 Ligand excluded by PLIP CL.218: 2 residues within 4Å: Chain P: S.55, I.66 Ligand excluded by PLIP CL.235: 3 residues within 4Å: Chain Q: G.23 Chain S: T.86 Ligands: EDO.251 Ligand excluded by PLIP CL.236: 3 residues within 4Å: Chain Q: Y.8, R.13 Ligands: ACY.256 Ligand excluded by PLIP CL.237: 1 residues within 4Å: Chain Q: Y.26 Ligand excluded by PLIP CL.238: 4 residues within 4Å: Chain Q: G.148, T.149 Chain T: N.61 Ligands: ACY.257 Ligand excluded by PLIP CL.242: 2 residues within 4Å: Chain R: G.12, R.47 Ligand excluded by PLIP CL.243: 1 residues within 4Å: Chain R: R.13 Ligand excluded by PLIP CL.244: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.245: 2 residues within 4Å: Chain R: T.39, T.40 Ligand excluded by PLIP CL.246: 2 residues within 4Å: Chain R: H.107, C.162 Ligand excluded by PLIP CL.247: 2 residues within 4Å: Chain R: S.55, I.66 Ligand excluded by PLIP CL.264: 3 residues within 4Å: Chain Q: T.86 Chain S: G.23 Ligands: EDO.280 Ligand excluded by PLIP CL.265: 3 residues within 4Å: Chain S: Y.8, R.13 Ligands: ACY.285 Ligand excluded by PLIP CL.266: 1 residues within 4Å: Chain S: Y.26 Ligand excluded by PLIP CL.267: 4 residues within 4Å: Chain R: N.61 Chain S: G.148, T.149 Ligands: ACY.286 Ligand excluded by PLIP CL.271: 2 residues within 4Å: Chain T: G.12, R.47 Ligand excluded by PLIP CL.272: 1 residues within 4Å: Chain T: R.13 Ligand excluded by PLIP CL.273: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.274: 2 residues within 4Å: Chain T: T.39, T.40 Ligand excluded by PLIP CL.275: 2 residues within 4Å: Chain T: H.107, C.162 Ligand excluded by PLIP CL.276: 2 residues within 4Å: Chain T: S.55, I.66 Ligand excluded by PLIP CL.293: 3 residues within 4Å: Chain U: G.23 Chain W: T.86 Ligands: EDO.309 Ligand excluded by PLIP CL.294: 3 residues within 4Å: Chain U: Y.8, R.13 Ligands: ACY.314 Ligand excluded by PLIP CL.295: 1 residues within 4Å: Chain U: Y.26 Ligand excluded by PLIP CL.296: 4 residues within 4Å: Chain U: G.148, T.149 Chain X: N.61 Ligands: ACY.315 Ligand excluded by PLIP CL.300: 2 residues within 4Å: Chain V: G.12, R.47 Ligand excluded by PLIP CL.301: 1 residues within 4Å: Chain V: R.13 Ligand excluded by PLIP CL.302: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.303: 2 residues within 4Å: Chain V: T.39, T.40 Ligand excluded by PLIP CL.304: 2 residues within 4Å: Chain V: H.107, C.162 Ligand excluded by PLIP CL.305: 2 residues within 4Å: Chain V: S.55, I.66 Ligand excluded by PLIP CL.322: 3 residues within 4Å: Chain U: T.86 Chain W: G.23 Ligands: EDO.338 Ligand excluded by PLIP CL.323: 3 residues within 4Å: Chain W: Y.8, R.13 Ligands: ACY.343 Ligand excluded by PLIP CL.324: 1 residues within 4Å: Chain W: Y.26 Ligand excluded by PLIP CL.325: 4 residues within 4Å: Chain V: N.61 Chain W: G.148, T.149 Ligands: ACY.344 Ligand excluded by PLIP CL.329: 2 residues within 4Å: Chain X: G.12, R.47 Ligand excluded by PLIP CL.330: 1 residues within 4Å: Chain X: R.13 Ligand excluded by PLIP CL.331: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.332: 2 residues within 4Å: Chain X: T.39, T.40 Ligand excluded by PLIP CL.333: 2 residues within 4Å: Chain X: H.107, C.162 Ligand excluded by PLIP CL.334: 2 residues within 4Å: Chain X: S.55, I.66 Ligand excluded by PLIP

TYR-LEU.16: 14 residues within 4Å: Chain A: H.33, A.136, E.137, P.138, G.139, D.140, S.141, T.155, S.156, G.157, G.158, S.159, G.160 Ligands: GOL.23 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.136, A:P.138, A:T.155 Hydrogen bonds: A:G.139, A:S.141, A:G.160 Water bridges: A:A.136, A:A.136 Salt bridges: A:H.33, A:H.33 TYR-LEU.21: 14 residues within 4Å: Chain B: H.33, A.136, E.137, P.138, G.139, D.140, S.141, T.155, S.156, G.157, G.158, S.159, G.160 Ligands: GOL.26 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.136, B:P.138, B:T.155 Hydrogen bonds: B:H.33, B:H.33, B:G.139, B:S.141, B:S.141, B:S.159 Water bridges: B:A.136, B:A.136 Salt bridges: B:H.33, B:H.33 TYR-LEU.45: 14 residues within 4Å: Chain C: H.33, A.136, E.137, P.138, G.139, D.140, S.141, T.155, S.156, G.157, G.158, S.159, G.160 Ligands: GOL.52 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:A.136, C:P.138, C:T.155 Hydrogen bonds: C:G.139, C:S.141, C:G.160 Water bridges: C:A.136, C:A.136 Salt bridges: C:H.33, C:H.33 TYR-LEU.50: 14 residues within 4Å: Chain D: H.33, A.136, E.137, P.138, G.139, D.140, S.141, T.155, S.156, G.157, G.158, S.159, G.160 Ligands: GOL.55 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.136, D:P.138, D:T.155 Hydrogen bonds: D:H.33, D:H.33, D:G.139, D:S.141, D:S.159 Water bridges: D:A.136, D:A.136 Salt bridges: D:H.33, D:H.33 TYR-LEU.74: 14 residues within 4Å: