SMTL ID : 2qak.1

HIV-1 PR mutant in complex with nelfinavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x 1UN: 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE(Non-covalent)

1UN.1: 25 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, N.30, G.48, G.49, I.50, T.80, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, N.30, V.32, I.47, G.48, G.49, I.50, V.82, I.84 22 PLIP interactions: 12 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.28, A:D.29, A:P.81, A:V.82, A:I.84, B:L.23, B:A.28, B:N.30, B:I.47, B:I.50, B:V.82, B:V.82, B:I.84 Hydrogen bonds: A:D.25, A:G.27, A:D.29, A:N.30, A:N.30 Water bridges: A:I.50, B:G.27 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozisek, M. et al., Evolutionary pathway of HIV resistance analyzed on molecular level: Enzymatic activities, 3-D structures and thermodynamics of HIV proteases resistant to nelfinavir. To be Published

Release Date

2008-07-01

Peptides

PROTEASE RETROPEPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE RETROPEPSIN

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