- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-10-mer
- Ligands
- 30 x MN: MANGANESE (II) ION(Non-covalent)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 4 residues within 4Å:- Chain A: T.212
- Chain E: M.48, K.62, T.63
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain B: M.48, K.62, T.63
- Chain C: T.212
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: M.48, K.62, T.63
- Chain B: T.212
Ligand excluded by PLIPCL.17: 5 residues within 4Å:- Chain C: M.48, K.62, T.63, R.109
- Chain D: T.212
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain D: M.48, K.62, T.63
- Chain E: T.212
Ligand excluded by PLIPCL.34: 4 residues within 4Å:- Chain F: T.212
- Chain J: M.48, K.62, T.63
Ligand excluded by PLIPCL.40: 4 residues within 4Å:- Chain F: M.48, K.62, T.63
- Chain G: T.212
Ligand excluded by PLIPCL.41: 4 residues within 4Å:- Chain G: M.48, K.62, T.63
- Chain H: T.212
Ligand excluded by PLIPCL.52: 4 residues within 4Å:- Chain H: M.48, K.62, T.63
- Chain I: T.212
Ligand excluded by PLIPCL.58: 4 residues within 4Å:- Chain I: M.48, K.62, T.63
- Chain J: T.212
Ligand excluded by PLIP- 10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.5: 20 residues within 4Å:- Chain A: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.2, MN.3, P3S.6
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.276, A:S.276
- Water bridges: A:Q.224, A:Q.224, A:R.343, A:R.343
- Salt bridges: A:R.338, A:R.343
- pi-Stacking: A:Y.355, A:Y.355
ADP.12: 21 residues within 4Å:- Chain B: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.8, MN.9, P3S.13
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.276, B:S.276
- Water bridges: B:Q.224, B:Q.224, B:R.343, B:R.343
- Salt bridges: B:R.338, B:R.343
ADP.18: 20 residues within 4Å:- Chain C: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.15, MN.16, P3S.19
11 PLIP interactions:1 interactions with chain B, 10 interactions with chain C- Hydrogen bonds: B:N.80, C:N.274, C:S.276, C:S.276, C:E.357
- Water bridges: C:R.343, C:R.343
- Salt bridges: C:R.338, C:R.343
- pi-Stacking: C:Y.355, C:Y.355
ADP.24: 20 residues within 4Å:- Chain D: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.21, MN.22, P3S.25
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.274, D:S.276, D:S.276
- Water bridges: D:Q.224
- Salt bridges: D:R.338, D:R.343, C:K.62
- pi-Stacking: D:Y.355, D:Y.355
ADP.29: 20 residues within 4Å:- Chain E: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.27, MN.28, P3S.30
8 PLIP interactions:7 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:N.274, E:S.276, E:S.276
- Water bridges: E:R.343, E:R.343
- Salt bridges: E:R.338, E:R.343, D:K.62
ADP.35: 21 residues within 4Å:- Chain F: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.32, MN.33, P3S.36
11 PLIP interactions:10 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: F:Q.224, F:N.274, F:S.276, F:S.276
- Water bridges: F:R.343, F:R.343
- Salt bridges: F:R.338, F:R.343, J:K.62
- pi-Stacking: F:Y.355, F:Y.355
ADP.42: 19 residues within 4Å:- Chain G: W.149, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.38, MN.39, P3S.43
6 PLIP interactions:5 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:N.274, G:S.276, G:S.276
- Salt bridges: G:R.338, G:R.343, F:K.62
ADP.47: 20 residues within 4Å:- Chain H: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.45, MN.46, P3S.48
8 PLIP interactions:2 interactions with chain G, 6 interactions with chain H- Hydrogen bonds: G:N.80, H:N.274, H:S.276, H:S.276, H:E.357
- Salt bridges: G:K.62, H:R.338, H:R.343
ADP.53: 21 residues within 4Å:- Chain I: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.50, MN.51, P3S.54
8 PLIP interactions:7 interactions with chain I, 1 interactions with chain H- Hydrogen bonds: I:N.274, I:S.276, I:S.276
- Water bridges: I:R.343, I:R.343
- Salt bridges: I:R.338, I:R.343, H:K.62
ADP.59: 21 residues within 4Å:- Chain J: W.149, F.150, G.151, M.152, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.56, MN.57, P3S.60
7 PLIP interactions:5 interactions with chain J, 2 interactions with chain I- Hydrogen bonds: J:N.274, J:S.276, J:S.276, I:N.80
- Salt bridges: J:R.338, J:R.343, I:K.62
- 10 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
P3S.6: 23 residues within 4Å:- Chain A: E.153, E.155, Y.181, E.215, V.216, E.222, N.267, G.268, G.270, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Chain E: D.82, S.85
- Ligands: MN.1, MN.2, MN.3, ADP.5
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:E.155, A:N.267, A:G.268, A:R.338, A:R.359, A:R.359
- Salt bridges: A:H.272, A:R.318
P3S.13: 21 residues within 4Å:- Chain A: D.82
- Chain B: E.153, E.155, Y.181, E.215, V.216, E.222, N.267, G.268, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.7, MN.8, MN.9, ADP.12
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:E.155, B:N.267, B:G.268, B:R.338, B:R.359, B:R.359
- Water bridges: B:G.268
- Salt bridges: B:H.272, B:R.318
P3S.19: 19 residues within 4Å:- Chain B: D.82
- Chain C: E.153, E.155, Y.181, E.215, E.222, G.268, G.270, H.272, R.318, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.14, MN.15, MN.16, ADP.18
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:E.155, C:E.155, C:E.215, C:G.268, C:H.272, C:R.338, C:R.359, C:R.359
- Water bridges: C:G.268
- Salt bridges: C:H.272, C:R.318
P3S.25: 19 residues within 4Å:- Chain C: D.82
- Chain D: E.153, E.155, Y.181, E.215, E.222, G.268, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.20, MN.21, MN.22, ADP.24
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:E.155, D:G.268, D:R.338, D:R.343, D:R.359, D:R.359
- Water bridges: D:Q.220
- Salt bridges: D:H.272, D:R.318
P3S.30: 19 residues within 4Å:- Chain D: D.82
- Chain E: E.153, E.155, Y.181, E.215, E.222, G.268, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.26, MN.27, MN.28, ADP.29
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:E.155, E:N.267, E:G.268, E:R.338, E:R.343, E:R.359, E:R.359
- Salt bridges: E:H.272, E:R.318
P3S.36: 19 residues within 4Å:- Chain F: E.153, E.155, Y.181, E.215, E.222, N.267, G.268, H.272, R.318, E.324, T.325, R.338, E.357, R.359
- Chain J: D.82
- Ligands: MN.31, MN.32, MN.33, ADP.35
9 PLIP interactions:8 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: F:E.155, F:G.268, F:R.338, F:R.359, F:R.359, J:D.82
- Water bridges: F:N.267
- Salt bridges: F:H.272, F:R.318
P3S.43: 22 residues within 4Å:- Chain F: D.82
- Chain G: E.153, E.155, Y.181, E.215, V.216, E.222, N.267, G.268, G.270, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.37, MN.38, MN.39, ADP.42
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:E.155, G:N.267, G:G.268, G:G.270, G:R.338, G:R.359, G:R.359
- Salt bridges: G:H.272, G:R.318
P3S.48: 21 residues within 4Å:- Chain G: D.82
- Chain H: E.153, E.155, Y.181, E.215, E.222, N.267, G.268, G.270, H.272, R.318, H.323, E.324, T.325, R.338, E.357, R.359
- Ligands: MN.44, MN.45, MN.46, ADP.47
9 PLIP interactions:9 interactions with chain H- Hydrogen bonds: H:E.155, H:N.267, H:G.268, H:R.338, H:R.343, H:R.359, H:R.359
- Salt bridges: H:H.272, H:R.318
P3S.54: 23 residues within 4Å:- Chain H: D.82
- Chain I: E.153, E.155, Y.181, E.215, E.222, N.267, G.268, A.269, G.270, H.272, R.318, H.323, E.324, T.325, R.338, R.343, E.357, R.359
- Ligands: MN.49, MN.50, MN.51, ADP.53
9 PLIP interactions:9 interactions with chain I- Hydrogen bonds: I:E.155, I:N.267, I:G.268, I:R.338, I:R.343, I:R.359, I:R.359
- Salt bridges: I:H.272, I:R.318
P3S.60: 22 residues within 4Å:- Chain I: D.82
- Chain J: E.153, E.155, Y.181, E.215, V.216, E.222, N.267, G.268, H.272, R.318, H.323, E.324, T.325, R.338, R.343, E.357, R.359
- Ligands: MN.55, MN.56, MN.57, ADP.59
10 PLIP interactions:10 interactions with chain J- Hydrogen bonds: J:E.155, J:G.270, J:H.323, J:R.338, J:R.343, J:R.359, J:R.359
- Water bridges: J:N.267
- Salt bridges: J:H.272, J:R.318
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Crystal structures of mammalian glutamine synthetases illustrate substrate-induced conformational changes and provide opportunities for drug and herbicide design. J.Mol.Biol. (2008)
- Release Date
- 2007-07-03
- Peptides
- Glutamine synthetase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-10-mer
- Ligands
- 30 x MN: MANGANESE (II) ION(Non-covalent)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 10 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Crystal structures of mammalian glutamine synthetases illustrate substrate-induced conformational changes and provide opportunities for drug and herbicide design. J.Mol.Biol. (2008)
- Release Date
- 2007-07-03
- Peptides
- Glutamine synthetase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J