SMTL ID : 2qcv.1

CRYSTAL STRUCTURE OF a putative 5-dehydro-2-deoxygluconokinase (IOLC) FROM BACILLUS HALODURANS C-125 AT 1.90 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 6 residues within 4Å: Chain A: E.175, T.206, K.240, A.271, G.272, D.273 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.46, A:S.46, A:G.272 Water bridges: A:K.240, A:G.270, A:D.273 PGE.2: 10 residues within 4Å: Chain A: K.160, R.163 Chain D: E.187, A.190, V.191, S.194, L.213, E.214, N.215, Y.228 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:E.187, D:E.187, D:S.194, A:R.167 Water bridges: D:N.215, A:R.163, A:R.167 PGE.3: 6 residues within 4Å: Chain B: E.175, T.206, K.240, A.271, G.272, D.273 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.46, B:S.46, B:G.272 Water bridges: B:K.240, B:G.270, B:D.273 PGE.4: 10 residues within 4Å: Chain B: K.160, R.163 Chain C: E.187, A.190, V.191, S.194, L.213, E.214, N.215, Y.228 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:E.187, C:S.194, B:R.167 Water bridges: C:N.215, B:R.163, B:R.167 PGE.5: 6 residues within 4Å: Chain C: E.175, T.206, K.240, A.271, G.272, D.273 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.46, C:S.46, C:G.272 Water bridges: C:K.240, C:G.270, C:D.273 PGE.6: 10 residues within 4Å: Chain B: E.187, A.190, V.191, S.194, L.213, E.214, N.215, Y.228 Chain C: K.160, R.163 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:E.187, B:E.187, B:S.194, C:R.167 Water bridges: B:N.215, C:R.163, C:R.167 PGE.7: 6 residues within 4Å: Chain D: E.175, T.206, K.240, A.271, G.272, D.273 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:S.46, D:S.46, D:G.272 Water bridges: D:K.240, D:G.270, D:D.273 PGE.8: 10 residues within 4Å: Chain A: E.187, A.190, V.191, S.194, L.213, E.214, N.215, Y.228 Chain D: K.160, R.163 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:R.167, A:E.187, A:S.194 Water bridges: D:R.163, D:R.167, A:N.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative 5-dehydro-2-deoxygluconokinase (NP_243185.1) from Bacillus halodurans at 1.90 A resolution. To be published

Release Date

2007-08-07

Peptides

Putative 5-dehydro-2-deoxygluconokinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Putative 5-dehydro-2-deoxygluconokinase