SMTL ID : 2qdg.1

Fructose-1,6-bisphosphate Schiff base intermediate in FBP aldolase from Leishmania mexicana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: R.178, E.217, E.219, K.259, L.300, G.302, R.333 Ligands: 2FP.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.302 Water bridges: A:R.333, A:R.333 Salt bridges: A:R.178, A:K.259, A:R.333 PO4.2: 6 residues within 4Å: Chain A: K.136, D.138, G.140, L.141, R.178 Ligands: 2FP.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.138, A:L.141 Water bridges: A:S.65, A:K.136, A:R.178, A:R.178, A:R.178 Salt bridges: A:K.136, A:R.178 PO4.4: 7 residues within 4Å: Chain B: R.178, E.217, E.219, L.300, G.302, R.333 Ligands: 2FP.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.302 Water bridges: B:R.178, B:R.178, B:R.333, B:R.333 Salt bridges: B:R.178, B:K.259, B:R.333 PO4.5: 7 residues within 4Å: Chain B: S.65, K.136, D.138, G.140, L.141, R.178 Ligands: 2FP.6 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.65, B:G.140, B:L.141 Water bridges: B:K.136, B:K.136, B:R.178, B:R.178 Salt bridges: B:K.136, B:R.178 PO4.7: 7 residues within 4Å: Chain C: R.178, E.217, E.219, L.300, G.302, R.333 Ligands: 2FP.9 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.302 Water bridges: C:R.333, C:R.333 Salt bridges: C:R.178, C:K.259, C:R.333 PO4.8: 5 residues within 4Å: Chain C: K.136, D.138, G.140, R.178 Ligands: 2FP.9 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.138, C:G.140 Water bridges: C:K.136, C:L.141, C:L.141, C:R.178, C:R.178 Salt bridges: C:K.136, C:R.178 PO4.10: 7 residues within 4Å: Chain D: R.178, E.217, E.219, L.300, G.302, R.333 Ligands: 2FP.12 8 PLIP interactions: 8 interactions with chain D Water bridges: D:R.178, D:R.178, D:R.333, D:R.333, D:R.333 Salt bridges: D:R.178, D:K.259, D:R.333 PO4.11: 5 residues within 4Å: Chain D: K.136, D.138, G.140, R.178 Ligands: 2FP.12 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.140 Water bridges: D:S.65, D:D.138, D:D.138, D:D.138, D:L.141, D:R.178 Salt bridges: D:K.136, D:R.178

4 x 2FP: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)(Post Translational Modification)

2FP.3: 19 residues within 4Å: Chain A: A.61, D.63, E.64, S.65, S.68, K.136, K.176, R.178, E.217, K.259, L.300, S.301, G.302, S.330, Y.331, A.332, R.333 Ligands: PO4.1, PO4.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.61, A:K.259 Hydrogen bonds: A:D.63, A:S.65, A:S.68, A:K.176, A:S.301, A:G.302, A:A.332, A:R.333 Water bridges: A:R.178 Salt bridges: A:K.136, A:R.178, A:K.259, A:R.333 2FP.6: 20 residues within 4Å: Chain B: A.61, D.63, E.64, S.65, S.68, I.106, K.136, K.176, R.178, E.217, K.259, L.300, S.301, G.302, S.330, Y.331, A.332, R.333 Ligands: PO4.4, PO4.5 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:A.61, B:K.259 Hydrogen bonds: B:D.63, B:S.65, B:S.68, B:K.176, B:S.301, B:G.302, B:A.332, B:R.333 Water bridges: B:R.72, B:K.176, B:R.178, B:R.178, B:R.178 Salt bridges: B:K.136, B:R.178, B:K.259, B:R.333 2FP.9: 19 residues within 4Å: Chain C: A.61, D.63, E.64, S.65, S.68, K.136, K.176, R.178, E.217, K.259, L.300, S.301, G.302, S.330, Y.331, A.332, R.333 Ligands: PO4.7, PO4.8 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:A.61, C:K.259 Hydrogen bonds: C:D.63, C:S.65, C:S.68, C:K.176, C:S.301, C:G.302, C:A.332, C:R.333 Water bridges: C:S.65, C:S.65 Salt bridges: C:K.136, C:R.178, C:K.259, C:R.333 2FP.12: 20 residues within 4Å: Chain D: A.61, D.63, E.64, S.65, S.68, I.106, K.136, K.176, R.178, E.217, K.259, L.300, S.301, G.302, S.330, Y.331, A.332, R.333 Ligands: PO4.10, PO4.11 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:A.61, D:K.259 Hydrogen bonds: D:D.63, D:E.64, D:E.64, D:S.65, D:S.68, D:K.176, D:S.301, D:A.332, D:R.333 Water bridges: D:S.65, D:S.65, D:R.72, D:R.72, D:R.72, D:R.178, D:R.178, D:R.178, D:R.333 Salt bridges: D:K.136, D:R.178, D:K.259, D:R.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lafrance-Vanasse, J. et al., Carboxy-Terminus Recruitment Induced by Substrate Binding in Eukaryotic Fructose Bis-phosphate Aldolases. Biochemistry (2007)

Release Date

2007-08-21

Peptides

Fructose-1,6-bisphosphate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-1,6-bisphosphate aldolase

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