SMTL ID : 2qdr.1

Crystal structure of a putative dioxygenase (npun_f5605) from nostoc punctiforme pcc 73102 at 2.60 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-octamer

Ligands

8 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.1: 9 residues within 4Å: Chain A: F.55, F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.236, A:E.240, A:W.262 UNL.4: 8 residues within 4Å: Chain B: F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.236, B:Q.236, B:E.240, B:W.262, B:H.273 UNL.7: 9 residues within 4Å: Chain C: F.55, F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.236, C:E.240, C:E.240, C:W.262 UNL.10: 8 residues within 4Å: Chain D: F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.236, D:E.240, D:H.273, D:H.273 UNL.13: 9 residues within 4Å: Chain E: F.55, F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.236, E:E.240, E:W.262, E:W.262 UNL.16: 8 residues within 4Å: Chain F: F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:Q.236, F:E.240, F:H.273, F:H.273, F:H.273, F:H.273 UNL.19: 9 residues within 4Å: Chain G: F.55, F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:Q.236, G:E.240, G:W.262, G:W.262 UNL.22: 8 residues within 4Å: Chain H: F.202, L.222, Q.236, E.240, I.256, W.262, L.270, H.273 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:Q.236, H:E.240, H:E.240, H:E.240, H:H.273, H:H.273

16 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 5 residues within 4Å: Chain A: P.50, R.51, Q.52, Y.53 Chain F: E.126 Ligand excluded by PLIP EPE.3: 3 residues within 4Å: Chain A: E.63, Q.65, E.153 Ligand excluded by PLIP EPE.5: 5 residues within 4Å: Chain B: P.50, R.51, Q.52, Y.53 Chain C: E.126 Ligand excluded by PLIP EPE.6: 2 residues within 4Å: Chain B: E.63, E.153 Ligand excluded by PLIP EPE.8: 5 residues within 4Å: Chain C: P.50, R.51, Q.52, Y.53 Chain H: E.126 Ligand excluded by PLIP EPE.9: 3 residues within 4Å: Chain C: E.63, Q.65, E.153 Ligand excluded by PLIP EPE.11: 5 residues within 4Å: Chain A: E.126 Chain D: P.50, R.51, Q.52, Y.53 Ligand excluded by PLIP EPE.12: 2 residues within 4Å: Chain D: E.63, E.153 Ligand excluded by PLIP EPE.14: 5 residues within 4Å: Chain B: E.126 Chain E: P.50, R.51, Q.52, Y.53 Ligand excluded by PLIP EPE.15: 3 residues within 4Å: Chain E: E.63, Q.65, E.153 Ligand excluded by PLIP EPE.17: 5 residues within 4Å: Chain F: P.50, R.51, Q.52, Y.53 Chain G: E.126 Ligand excluded by PLIP EPE.18: 2 residues within 4Å: Chain F: E.63, E.153 Ligand excluded by PLIP EPE.20: 5 residues within 4Å: Chain D: E.126 Chain G: P.50, R.51, Q.52, Y.53 Ligand excluded by PLIP EPE.21: 3 residues within 4Å: Chain G: E.63, Q.65, E.153 Ligand excluded by PLIP EPE.23: 5 residues within 4Å: Chain E: E.126 Chain H: P.50, R.51, Q.52, Y.53 Ligand excluded by PLIP EPE.24: 2 residues within 4Å: Chain H: E.63, E.153 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein (ZP_00345151.1) from Nostoc punctiforme PCC 73102 at 2.60 A resolution. To be published

Release Date

2007-07-24

Peptides

Uncharacterized protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Uncharacterized protein