- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: S.20, W.24
- Chain B: E.31, W.32
Ligand excluded by PLIPCL.3: 2 residues within 4Å:- Chain A: Q.174, R.175
Ligand excluded by PLIPCL.7: 5 residues within 4Å:- Chain B: T.121, R.132, L.208, E.209, P.210
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain B: G.191, S.192
- Chain D: E.134, Y.135
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain C: S.20, W.24
- Chain D: E.31, W.32
Ligand excluded by PLIPCL.18: 2 residues within 4Å:- Chain C: Q.174, R.175
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain D: T.121, R.132, L.208, E.209, P.210
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain B: E.134, Y.135
- Chain D: G.191, S.192
Ligand excluded by PLIP- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.4: 1 residues within 4Å:- Chain A: G.181
No protein-ligand interaction detected (PLIP)MG.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.10: 1 residues within 4Å:- Ligands: GOL.15
No protein-ligand interaction detected (PLIP)MG.19: 1 residues within 4Å:- Chain C: G.181
No protein-ligand interaction detected (PLIP)MG.24: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.25: 1 residues within 4Å:- Ligands: GOL.30
No protein-ligand interaction detected (PLIP)- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: Y.40, G.43, W.44, T.47
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.40, A:W.44, A:T.47
- Water bridges: A:G.39
GOL.6: 7 residues within 4Å:- Chain A: D.77, G.78, T.79, Y.94, I.95, V.96
- Chain B: T.158
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.77, A:G.78, A:T.79, A:Y.94, A:I.95, B:T.158
- Water bridges: A:I.95, B:T.158
GOL.12: 7 residues within 4Å:- Chain A: R.139, E.140
- Chain B: Q.11, D.193, T.194, D.195
- Chain D: P.137
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.139, A:E.140, B:Q.11, B:T.194
GOL.13: 7 residues within 4Å:- Chain B: R.147, G.148, R.149
- Chain D: R.147, G.148, R.149
- Ligands: GOL.28
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain D- Hydrogen bonds: B:G.148, B:R.149, D:R.149
- Water bridges: B:R.149, B:R.149, D:Y.135, D:Y.135, D:R.147, D:R.149, D:R.149
GOL.14: 6 residues within 4Å:- Chain A: L.75, V.96, Y.161
- Chain B: S.154, H.155, H.181
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.181, A:L.75
- Water bridges: B:S.154, A:Y.161
GOL.15: 3 residues within 4Å:- Chain B: Q.92, D.93
- Ligands: MG.10
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.92
GOL.20: 4 residues within 4Å:- Chain C: Y.40, G.43, W.44, T.47
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.40, C:W.44
- Water bridges: C:G.39
GOL.21: 7 residues within 4Å:- Chain C: D.77, G.78, T.79, Y.94, I.95, V.96
- Chain D: T.158
7 PLIP interactions:5 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:G.78, C:T.79, C:T.79, C:I.95, D:T.158, D:T.158
- Water bridges: C:I.95
GOL.27: 7 residues within 4Å:- Chain B: P.137
- Chain C: R.139, E.140
- Chain D: Q.11, D.193, T.194, D.195
4 PLIP interactions:2 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: D:Q.11, D:T.194, C:R.139
- Water bridges: B:E.110
GOL.28: 7 residues within 4Å:- Chain B: R.147, G.148, R.149
- Chain D: R.147, G.148, R.149
- Ligands: GOL.13
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:R.149, D:G.148
- Water bridges: B:Y.135, B:R.147, B:R.149, B:R.149, D:R.149, D:R.149, D:R.149
GOL.29: 6 residues within 4Å:- Chain C: L.75, V.96, Y.161
- Chain D: S.154, H.155, H.181
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:H.181, C:L.75
- Water bridges: D:S.154, D:H.155
GOL.30: 3 residues within 4Å:- Chain D: Q.92, D.93
- Ligands: MG.25
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.92
- Water bridges: D:E.96
- 2 x IBN: 2-METHYLPROPAN-1-AMINE(Non-covalent)
IBN.11: 9 residues within 4Å:- Chain A: C.113, S.114, C.115, W.118
- Chain B: Y.37, M.40, R.56, Y.72, Y.76
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:W.118, B:R.56
- Hydrogen bonds: B:Y.72
IBN.26: 9 residues within 4Å:- Chain C: C.113, S.114, C.115, W.118
- Chain D: Y.37, M.40, R.56, Y.72, Y.76
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:R.56, C:W.118
- Hydrogen bonds: D:Y.37, D:Y.72, D:Y.72
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, L. et al., High resolution X-ray molecular structure of the nitrile hydratase from Rhodococcus erythropolis AJ270 reveals posttranslational oxidation of two cysteines into sulfinic acids and a novel biocatalytic nitrile hydration mechanism. Biochem.Biophys.Res.Commun. (2007)
- Release Date
- 2008-05-13
- Peptides
- Nitrile hydratase subunit alpha: AC
Nitrile hydratase subunit beta: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x IBN: 2-METHYLPROPAN-1-AMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Song, L. et al., High resolution X-ray molecular structure of the nitrile hydratase from Rhodococcus erythropolis AJ270 reveals posttranslational oxidation of two cysteines into sulfinic acids and a novel biocatalytic nitrile hydration mechanism. Biochem.Biophys.Res.Commun. (2007)
- Release Date
- 2008-05-13
- Peptides
- Nitrile hydratase subunit alpha: AC
Nitrile hydratase subunit beta: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B