SMTL ID : 2qe6.4 (3 other biounits)

CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE (TFU_2867) FROM THERMOBIFIDA FUSCA YX AT 1.95 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.206, A.221 Chain B: K.207, R.210 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.206, B:Y.46, B:Y.46 Water bridges: A:Q.206, B:R.210 SO4.2: 3 residues within 4Å: Chain A: A.42, L.43, Y.46 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.42 Water bridges: A:L.43 SO4.3: 2 residues within 4Å: Chain A: Y.243, M.266 No protein-ligand interaction detected (PLIP) SO4.8: 4 residues within 4Å: Chain A: K.207, R.210 Chain B: Q.206, A.221 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.206, A:Y.46, A:Y.46 Water bridges: B:Q.206, A:R.210 SO4.9: 3 residues within 4Å: Chain B: A.42, L.43, Y.46 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.42 Water bridges: B:L.43 SO4.10: 2 residues within 4Å: Chain B: Y.243, M.266 No protein-ligand interaction detected (PLIP)

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 18 residues within 4Å: Chain A: I.23, A.24, Y.27, N.61, R.62, G.85, S.86, G.87, D.111, I.112, A.135, D.136, V.137, R.138, V.164, G.165, M.166, Y.169 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.27 Hydrogen bonds: A:A.24, A:Y.27, A:N.61, A:G.85, A:G.87, A:I.112, A:D.136, A:D.136, A:V.137, A:V.164 Water bridges: A:D.113, A:D.113, A:V.164 Salt bridges: A:R.62 pi-Cation interactions: A:Y.27 SAM.11: 18 residues within 4Å: Chain B: I.23, A.24, Y.27, N.61, R.62, G.85, S.86, G.87, D.111, I.112, A.135, D.136, V.137, R.138, V.164, G.165, M.166, Y.169 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.27 Hydrogen bonds: B:A.24, B:Y.27, B:N.61, B:G.85, B:G.87, B:I.112, B:D.136, B:D.136, B:V.137, B:V.164 Water bridges: B:D.113, B:D.113, B:V.164 Salt bridges: B:R.62 pi-Cation interactions: B:Y.27

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 10 residues within 4Å: Chain A: S.57, A.58, N.61, H.168, T.195, S.196, L.197, L.264, G.265 Ligands: MPD.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.57, A:S.57 Water bridges: A:T.244, A:L.264 MPD.6: 8 residues within 4Å: Chain A: I.23, V.26, Y.27, A.47, Y.169, T.212, L.216 Ligands: MPD.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.26, A:Y.27, A:A.47 Hydrogen bonds: A:Y.169, A:Y.169 MPD.7: 10 residues within 4Å: Chain A: S.86, G.87, L.88, P.89, N.93, Y.109, V.116, G.120, L.123, L.124 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.89, A:Y.109, A:Y.109, A:V.116, A:L.123, A:L.124, A:L.124 Water bridges: A:N.93, A:T.94 MPD.12: 10 residues within 4Å: Chain B: S.57, A.58, N.61, H.168, T.195, S.196, L.197, L.264, G.265 Ligands: MPD.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.57, B:S.57 Water bridges: B:T.244, B:L.264 MPD.13: 8 residues within 4Å: Chain B: I.23, V.26, Y.27, A.47, Y.169, T.212, L.216 Ligands: MPD.12 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.26, B:Y.27, B:A.47 Hydrogen bonds: B:Y.169, B:Y.169 MPD.14: 10 residues within 4Å: Chain B: S.86, G.87, L.88, P.89, N.93, Y.109, V.116, G.120, L.123, L.124 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.89, B:Y.109, B:Y.109, B:V.116, B:L.123, B:L.124, B:L.124 Water bridges: B:N.93, B:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein Tfu_2867 (YP_290923.1) from Thermobifida fusca YX at 1.95 A resolution. To be Published

Release Date

2007-07-03

Peptides

Uncharacterized protein Tfu_2867: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein Tfu_2867

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