SMTL ID : 2qe9.1

Crystal structure of a putative metal-dependent hydrolase (yiza, bsu10800) from bacillus subtilis at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.63, H.143, H.147 Ligands: CIT.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.63, A:H.143, A:H.147 NI.4: 4 residues within 4Å: Chain B: H.63, H.143, H.147 Ligands: CIT.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.63, B:H.143, B:H.147

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: V.54, H.63, H.143, H.146, H.147 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Salt bridges: A:H.63, A:H.63, A:H.143, A:H.143, A:H.146, A:H.147 CIT.5: 8 residues within 4Å: Chain A: A.165 Chain B: V.54, H.63, H.143, H.146, H.147 Ligands: EDO.3, NI.4 6 PLIP interactions: 6 interactions with chain B Salt bridges: B:H.63, B:H.63, B:H.143, B:H.143, B:H.146, B:H.147

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: A.165, S.166, F.167 Chain B: H.139, A.142, H.143 Ligands: CIT.5 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.139, A:F.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized protein BSU10800 (YP_054576.1) from Bacillus subtilis at 1.90 A resolution. To be published

Release Date

2007-07-10

Peptides

Uncharacterized protein yizA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein yizA