SMTL ID : 2qed.1

Crystal structure of Salmonella thyphimurium LT2 glyoxalase II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: D.64, H.65, D.134, H.172 Ligands: FE.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.64, A:H.65, A:D.134, H2O.14, H2O.17 FE.2: 6 residues within 4Å: Chain A: H.60, H.62, H.65, H.117, D.134 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.60, A:H.62, A:H.117, A:D.134, H2O.14

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: P.163, D.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.164, A:D.164 Water bridges: A:D.164, A:D.165 EDO.4: 3 residues within 4Å: Chain A: Q.154, M.157, K.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.154 EDO.5: 8 residues within 4Å: Chain A: Y.153, L.156, M.157, N.160, F.223, L.224, R.225, T.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.160, A:T.226, A:T.226, A:T.226 EDO.6: 6 residues within 4Å: Chain A: N.11, S.12, I.13, A.45, E.48, H.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.11 Water bridges: A:S.12, A:S.12, A:E.48, A:H.49 EDO.7: 4 residues within 4Å: Chain A: R.30, P.53, E.54, Q.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.30 Water bridges: A:Q.78, A:Q.78, A:Q.78 EDO.8: 5 residues within 4Å: Chain A: L.10, N.11, S.12, W.22, M.208 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.10, A:S.12, A:S.12 Water bridges: A:N.11, A:N.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campos-Bermudez, V.A. et al., Biochemical and Structural Characterization of Salmonella typhimurium Glyoxalase II: New Insights into Metal Ion Selectivity. Biochemistry (2007)

Release Date

2007-10-09

Peptides

Hydroxyacylglutathione hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacylglutathione hydrolase