- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 8 residues within 4Å:- Chain A: D.127, D.156, N.193, H.278, H.315
- Ligands: FE.1, F.4, NA.9
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.156, A:H.278, A:H.315
ZN.15: 7 residues within 4Å:- Chain B: D.127, D.156, N.193, H.278, H.315
- Ligands: FE.14, F.17
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.156, B:H.278, B:H.315
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 11 residues within 4Å:- Chain A: Y.159, R.162, H.194, H.287, H.317, Y.357
- Ligands: FE.1, F.4, NA.9, NA.11, SO4.13
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.357, A:Y.357
- Salt bridges: A:H.194, A:H.287, A:H.317
SO4.12: 6 residues within 4Å:- Chain A: R.250
- Chain B: H.288
- Ligands: SO4.16, NA.22, NA.23, NA.24
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.250, B:H.288
SO4.13: 7 residues within 4Å:- Chain A: H.288, E.291
- Chain B: R.250
- Ligands: SO4.3, NA.9, NA.10, NA.11
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.193
- Salt bridges: A:H.288, B:R.250
SO4.16: 9 residues within 4Å:- Chain B: H.194, H.287, H.317, Y.357
- Ligands: SO4.12, FE.14, F.17, NA.22, NA.24
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.357
- Water bridges: B:H.287, B:H.288
- Salt bridges: B:H.194, B:H.287, B:H.317
- 2 x F: FLUORIDE ION(Non-covalent)
F.4: 10 residues within 4Å:- Chain A: D.127, D.156, N.193, H.194, H.315, H.317
- Ligands: FE.1, ZN.2, SO4.3, NA.9
No protein-ligand interaction detected (PLIP)F.17: 11 residues within 4Å:- Chain B: D.127, D.156, N.193, H.194, H.278, H.315, H.317
- Ligands: FE.14, ZN.15, SO4.16, NA.22
No protein-ligand interaction detected (PLIP)- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.73, N.165
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.73
NAG.6: 7 residues within 4Å:- Chain A: M.3, S.7, D.8, V.9, F.132, N.135, S.139
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.132
- Hydrogen bonds: A:D.8, A:D.8, A:N.135, A:S.139
NAG.7: 5 residues within 4Å:- Chain A: K.387, N.388, T.390, H.391, W.411
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.390
- Hydrogen bonds: A:T.390
NAG.8: 3 residues within 4Å:- Chain A: E.43, R.100, N.101
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.101
NAG.18: 3 residues within 4Å:- Chain B: F.72, N.73, N.165
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.73
NAG.19: 7 residues within 4Å:- Chain B: M.3, S.7, D.8, F.132, N.135, S.139, R.180
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.132
- Hydrogen bonds: B:D.8, B:D.8, B:N.135, B:S.139, B:R.180, B:R.180
NAG.20: 3 residues within 4Å:- Chain B: N.388, T.390, H.391
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.390
NAG.21: 4 residues within 4Å:- Chain B: Y.16, E.43, R.100, N.101
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:Y.16
- Hydrogen bonds: B:N.101
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.9: 9 residues within 4Å:- Chain A: N.193, H.194, H.288, H.315
- Ligands: ZN.2, SO4.3, F.4, NA.11, SO4.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.193, A:N.193
NA.10: 4 residues within 4Å:- Chain A: H.287
- Chain B: R.250
- Ligands: NA.11, SO4.13
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.250
- Water bridges: A:H.288
NA.11: 6 residues within 4Å:- Chain A: H.287, H.288
- Ligands: SO4.3, NA.9, NA.10, SO4.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.287
NA.22: 7 residues within 4Å:- Chain B: N.193, H.194, H.288, H.315
- Ligands: SO4.12, SO4.16, F.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.193
- Water bridges: B:H.288, B:H.315
NA.23: 3 residues within 4Å:- Chain B: H.287
- Ligands: SO4.12, NA.24
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.287
NA.24: 4 residues within 4Å:- Chain B: H.287
- Ligands: SO4.12, SO4.16, NA.23
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.287
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schenk, G. et al., Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle. Bmc Struct.Biol. (2008)
- Release Date
- 2008-10-14
- Peptides
- Purple acid phosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x F: FLUORIDE ION(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schenk, G. et al., Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle. Bmc Struct.Biol. (2008)
- Release Date
- 2008-10-14
- Peptides
- Purple acid phosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B