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SMTL ID : 2qfv.2
(1 other biounit)
Crystal structure of Saccharomyces cerevesiae mitochondrial NADP(+)-dependent isocitrate dehydrogenase in complex with NADP(+)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
NAP
:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NAP.1:
19 residues within 4Å:
Chain A:
K.87
,
A.89
,
T.90
,
I.91
,
T.92
,
R.97
,
N.111
,
L.304
,
G.305
,
E.322
,
H.325
,
G.326
,
T.327
,
V.328
,
T.329
,
R.330
,
H.331
,
T.343
,
N.344
21
PLIP interactions
:
21 interactions with chain A
Hydrogen bonds:
A:K.87
,
A:T.90
,
A:T.90
,
A:T.92
,
A:T.92
,
A:R.97
,
A:R.97
,
A:N.111
,
A:E.322
,
A:G.326
,
A:G.326
,
A:T.327
,
A:V.328
,
A:R.330
,
A:N.344
,
A:N.344
Water bridges:
A:R.330
,
A:H.331
,
A:A.347
Salt bridges:
A:R.330
,
A:H.331
NAP.2:
20 residues within 4Å:
Chain B:
K.87
,
A.89
,
T.90
,
I.91
,
T.92
,
R.97
,
N.111
,
L.304
,
G.305
,
E.322
,
H.325
,
G.326
,
T.327
,
V.328
,
T.329
,
R.330
,
H.331
,
T.343
,
N.344
,
D.392
21
PLIP interactions
:
21 interactions with chain B
Hydrogen bonds:
B:K.87
,
B:T.90
,
B:T.90
,
B:T.92
,
B:T.92
,
B:T.92
,
B:R.97
,
B:R.97
,
B:N.111
,
B:G.326
,
B:G.326
,
B:T.327
,
B:V.328
,
B:R.330
,
B:N.344
,
B:N.344
Water bridges:
B:H.331
,
B:H.331
,
B:A.347
Salt bridges:
B:R.330
,
B:H.331
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Peng, Y.J. et al., Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction. Protein Sci. (2008)
Release Date
2008-07-01
Peptides
Isocitrate dehydrogenase [NADP]:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Isocitrate dehydrogenase [NADP]
Related Entries With Identical Sequence
2qfv.1
|
2qfw.1
|
2qfw.2
|
2qfw.3
|
2qfx.1
|
2qfx.2
|
2qfx.3
|
2qfy.1
|
2qfy.2
|
2qfy.3
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