SMTL ID : 2qg6.1

Crystal structure of human nicotinamide riboside kinase (NRK1) in complex with nicotinamide mononucleotide (NMN)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: N.13, S.14, G.15, K.16, T.17, R.132 Ligands: NMN.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.13, A:S.14, A:G.15, A:K.16, A:T.17, A:T.17 Water bridges: A:G.15, A:K.16, A:T.17, A:T.18 Salt bridges: A:K.16, A:R.132

1 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.2: 14 residues within 4Å: Chain A: T.12, N.13, K.16, D.36, F.39, Y.55, D.56, F.100, R.129, R.132, Y.134, Q.135, P.136 Ligands: PO4.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.12, A:T.12, A:N.13, A:D.36, A:D.56, A:R.129, A:R.129 Water bridges: A:K.16, A:K.16, A:T.17, A:Q.135 Salt bridges: A:K.16, A:R.132 pi-Stacking: A:Y.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, J.A. et al., Crystal structure of human nicotinamide riboside kinase. Structure (2007)

Release Date

2007-10-02

Peptides

Nicotinamide riboside kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide riboside kinase 1

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