SMTL ID : 2qgi.1 (1 other biounit)

The UDP complex structure of the sixth gene product of the F1-ATPase operon of Rhodobacter blasticus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.81, D.83, H.201, G.203 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.81, A:D.83, A:H.201, H2O.5, H2O.6 MN.2: 5 residues within 4Å: Chain B: H.81, D.83, H.201, G.203 Ligands: UDP.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.81, B:D.83, B:D.83, B:H.201

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 12 residues within 4Å: Chain B: L.22, R.24, N.53, N.57, H.81, E.82, D.83, F.174, H.201, G.203, R.204 Ligands: MN.2 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:L.22, B:R.24, B:N.57, B:N.57, B:E.82 Water bridges: B:R.24, B:K.28, B:K.28, B:E.82, B:D.83, B:R.204, B:R.204, B:I.206 Salt bridges: B:H.81, B:H.81, B:H.201 pi-Stacking: B:F.174 pi-Cation interactions: B:R.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Enroth, C. et al., Crystal structure of a protein, structurally related to glycosyltransferases, encoded in the Rhodobacter blasticus atp operon. Biochim.Biophys.Acta (2008)

Release Date

2008-01-22

Peptides

ATP synthase subunits region ORF 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP synthase subunits region ORF 6

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