SMTL ID : 2qhf.1

Mycobacterium tuberculosis Chorismate synthase in complex with NCA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

48 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: G.240, D.241, S.246 Chain B: W.4, A.250, A.251, M.357 Ligand excluded by PLIP ACT.2: 5 residues within 4Å: Chain A: Q.36, T.149, R.152, A.153, R.156 Ligand excluded by PLIP ACT.3: 5 residues within 4Å: Chain A: S.10, H.11, R.49, L.133, S.137 Ligand excluded by PLIP ACT.4: 3 residues within 4Å: Chain A: R.110, A.335, V.336 Ligand excluded by PLIP ACT.5: 4 residues within 4Å: Chain A: R.40, R.49, M.50, R.139 Ligand excluded by PLIP ACT.6: 9 residues within 4Å: Chain A: E.9, S.10, G.12, A.14, L.15, I.77, G.78, N.79, R.139 Ligand excluded by PLIP ACT.7: 6 residues within 4Å: Chain A: L.108, T.109, R.110, D.117, A.129, I.338 Ligand excluded by PLIP ACT.8: 4 residues within 4Å: Chain A: R.182, G.305, Q.306, P.307 Ligand excluded by PLIP ACT.9: 3 residues within 4Å: Chain A: R.3 Chain B: D.241 Chain D: R.3 Ligand excluded by PLIP ACT.10: 6 residues within 4Å: Chain A: A.34, L.37, A.38, R.41, R.54, D.55 Ligand excluded by PLIP ACT.11: 5 residues within 4Å: Chain A: G.114, H.115, Q.256, A.257 Chain B: G.300 Ligand excluded by PLIP ACT.12: 3 residues within 4Å: Chain A: A.203, D.204, A.207 Ligand excluded by PLIP ACT.18: 7 residues within 4Å: Chain A: W.4, A.250, A.251, M.357 Chain B: G.240, D.241, S.246 Ligand excluded by PLIP ACT.19: 5 residues within 4Å: Chain B: Q.36, T.149, R.152, A.153, R.156 Ligand excluded by PLIP ACT.20: 5 residues within 4Å: Chain B: S.10, H.11, R.49, L.133, S.137 Ligand excluded by PLIP ACT.21: 3 residues within 4Å: Chain B: R.110, A.335, V.336 Ligand excluded by PLIP ACT.22: 4 residues within 4Å: Chain B: R.40, R.49, M.50, R.139 Ligand excluded by PLIP ACT.23: 9 residues within 4Å: Chain B: E.9, S.10, G.12, A.14, L.15, I.77, G.78, N.79, R.139 Ligand excluded by PLIP ACT.24: 6 residues within 4Å: Chain B: L.108, T.109, R.110, D.117, A.129, I.338 Ligand excluded by PLIP ACT.25: 4 residues within 4Å: Chain B: R.182, G.305, Q.306, P.307 Ligand excluded by PLIP ACT.26: 3 residues within 4Å: Chain A: D.241 Chain B: R.3 Chain C: R.3 Ligand excluded by PLIP ACT.27: 6 residues within 4Å: Chain B: A.34, L.37, A.38, R.41, R.54, D.55 Ligand excluded by PLIP ACT.28: 5 residues within 4Å: Chain A: G.300 Chain B: G.114, H.115, Q.256, A.257 Ligand excluded by PLIP ACT.29: 3 residues within 4Å: Chain B: A.203, D.204, A.207 Ligand excluded by PLIP ACT.35: 7 residues within 4Å: Chain C: G.240, D.241, S.246 Chain D: W.4, A.250, A.251, M.357 Ligand excluded by PLIP ACT.36: 5 residues within 4Å: Chain C: Q.36, T.149, R.152, A.153, R.156 Ligand excluded by PLIP ACT.37: 5 residues within 4Å: Chain C: S.10, H.11, R.49, L.133, S.137 Ligand excluded by PLIP ACT.38: 3 residues within 4Å: Chain C: R.110, A.335, V.336 Ligand excluded by PLIP ACT.39: 4 residues within 4Å: Chain C: R.40, R.49, M.50, R.139 Ligand excluded by PLIP ACT.40: 9 residues within 4Å: Chain C: E.9, S.10, G.12, A.14, L.15, I.77, G.78, N.79, R.139 Ligand excluded by PLIP ACT.41: 6 residues within 4Å: Chain C: L.108, T.109, R.110, D.117, A.129, I.338 Ligand excluded by PLIP ACT.42: 4 residues within 4Å: Chain C: R.182, G.305, Q.306, P.307 Ligand excluded by PLIP ACT.43: 3 residues within 4Å: Chain B: R.3 Chain C: R.3 Chain D: D.241 Ligand excluded by PLIP ACT.44: 6 residues within 4Å: Chain C: A.34, L.37, A.38, R.41, R.54, D.55 Ligand excluded by PLIP ACT.45: 5 residues within 4Å: Chain C: G.114, H.115, Q.256, A.257 Chain D: G.300 Ligand excluded by PLIP ACT.46: 3 residues within 4Å: Chain C: A.203, D.204, A.207 Ligand excluded by PLIP ACT.52: 7 residues within 4Å: Chain C: W.4, A.250, A.251, M.357 Chain D: G.240, D.241, S.246 Ligand excluded by PLIP ACT.53: 5 residues within 4Å: Chain D: Q.36, T.149, R.152, A.153, R.156 Ligand excluded by PLIP ACT.54: 5 residues within 4Å: Chain D: S.10, H.11, R.49, L.133, S.137 Ligand excluded by PLIP ACT.55: 3 residues within 4Å: Chain D: R.110, A.335, V.336 Ligand excluded by PLIP ACT.56: 4 residues within 4Å: Chain D: R.40, R.49, M.50, R.139 Ligand excluded by PLIP ACT.57: 9 residues within 4Å: Chain D: E.9, S.10, G.12, A.14, L.15, I.77, G.78, N.79, R.139 Ligand excluded by PLIP ACT.58: 6 residues within 4Å: Chain D: L.108, T.109, R.110, D.117, A.129, I.338 Ligand excluded by PLIP ACT.59: 4 residues within 4Å: Chain D: R.182, G.305, Q.306, P.307 Ligand excluded by PLIP ACT.60: 3 residues within 4Å: Chain A: R.3 Chain C: D.241 Chain D: R.3 Ligand excluded by PLIP ACT.61: 6 residues within 4Å: Chain D: A.34, L.37, A.38, R.41, R.54, D.55 Ligand excluded by PLIP ACT.62: 5 residues within 4Å: Chain C: G.300 Chain D: G.114, H.115, Q.256, A.257 Ligand excluded by PLIP ACT.63: 3 residues within 4Å: Chain D: A.203, D.204, A.207 Ligand excluded by PLIP

8 x NA: SODIUM ION(Non-functional Binders)

NA.13: 3 residues within 4Å: Chain A: S.374, L.375, A.376 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.24, A:L.375, A:A.376 Water bridges: A:S.374, A:S.374 NA.14: 4 residues within 4Å: Chain A: P.180, N.293, P.307, R.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.293, A:R.309 NA.30: 3 residues within 4Å: Chain B: S.374, L.375, A.376 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.374, B:L.375, B:A.376 Water bridges: B:S.374, B:S.374 NA.31: 4 residues within 4Å: Chain B: P.180, N.293, P.307, R.309 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.293, B:R.309 NA.47: 3 residues within 4Å: Chain C: S.374, L.375, A.376 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.24, C:L.375, C:A.376 Water bridges: C:S.374, C:S.374 NA.48: 4 residues within 4Å: Chain C: P.180, N.293, P.307, R.309 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.293, C:R.309 NA.64: 3 residues within 4Å: Chain D: S.374, L.375, A.376 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.374, D:L.375, D:A.376 Water bridges: D:S.374, D:S.374 NA.65: 4 residues within 4Å: Chain D: P.180, N.293, P.307, R.309 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.293, D:R.309

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.15: 5 residues within 4Å: Chain A: R.112, T.319, H.339, Q.340, R.341 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain B: R.112, T.319, H.339, Q.340, R.341 Ligand excluded by PLIP CL.49: 5 residues within 4Å: Chain C: R.112, T.319, H.339, Q.340, R.341 Ligand excluded by PLIP CL.66: 5 residues within 4Å: Chain D: R.112, T.319, H.339, Q.340, R.341 Ligand excluded by PLIP

4 x NCA: NICOTINAMIDE(Non-covalent)

NCA.16: 12 residues within 4Å: Chain A: R.40, R.46, A.138, T.141, I.255, Q.256, M.314, I.317, R.341, A.346, A.350, V.353 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.138, A:I.317 Hydrogen bonds: A:R.40, A:R.46, A:R.46, A:T.141, A:R.341, A:R.341 Water bridges: A:T.141 NCA.33: 12 residues within 4Å: Chain B: R.40, R.46, A.138, T.141, I.255, Q.256, M.314, I.317, R.341, A.346, A.350, V.353 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.138, B:I.317 Hydrogen bonds: B:R.40, B:R.46, B:R.46, B:T.141, B:R.341, B:R.341 Water bridges: B:T.141 NCA.50: 12 residues within 4Å: Chain C: R.40, R.46, A.138, T.141, I.255, Q.256, M.314, I.317, R.341, A.346, A.350, V.353 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:A.138, C:I.317 Hydrogen bonds: C:R.40, C:R.46, C:R.46, C:T.141, C:T.141, C:R.341, C:R.341 NCA.67: 12 residues within 4Å: Chain D: R.40, R.46, A.138, T.141, I.255, Q.256, M.314, I.317, R.341, A.346, A.350, V.353 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:A.138, D:I.317 Hydrogen bonds: D:R.40, D:R.46, D:R.46, D:T.141, D:T.141, D:R.341, D:R.341

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.17: 8 residues within 4Å: Chain A: M.1, L.2, G.21, L.367, G.371, G.372, D.373 Chain C: E.368 7 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: A:G.371, A:D.373, C:E.368 Water bridges: A:G.372, A:D.373, A:D.373, D:K.123 TRS.34: 8 residues within 4Å: Chain B: M.1, L.2, G.21, L.367, G.371, G.372, D.373 Chain D: E.368 7 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: B:G.371, B:D.373, D:E.368 Water bridges: B:G.372, B:D.373, B:D.373, C:K.123 TRS.51: 8 residues within 4Å: Chain A: E.368 Chain C: M.1, L.2, G.21, L.367, G.371, G.372, D.373 7 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: C:M.1, C:G.371 Water bridges: C:G.372, C:D.373, B:K.123, B:Y.124, A:E.368 TRS.68: 8 residues within 4Å: Chain B: E.368 Chain D: M.1, L.2, G.21, L.367, G.371, G.372, D.373 7 PLIP interactions: 2 interactions with chain A, 4 interactions with chain D, 1 interactions with chain B Water bridges: A:K.123, A:Y.124, D:G.372, D:D.373, B:E.368 Hydrogen bonds: D:M.1, D:G.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruning, M. et al., Mycobacterium tuberculosis Chorismate synthase in complex with NCA. To be Published

Release Date

2008-07-15

Peptides

Chorismate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Chorismate synthase

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