SMTL ID : 2qip.1

Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.80, P.81, Y.82, I.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.81, A:I.83 Water bridges: A:I.83 EDO.2: 5 residues within 4Å: Chain A: K.11, D.108, V.109, D.110, K.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.109, A:K.134 EDO.3: 4 residues within 4Å: Chain A: R.127, Q.130, R.131 Chain B: E.104 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:R.127 Hydrogen bonds: B:E.104 EDO.4: 5 residues within 4Å: Chain A: P.81 Chain B: S.122, L.123, E.126, T.148 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.126 EDO.5: 4 residues within 4Å: Chain A: Y.82, Q.84, R.85, K.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.85, A:R.85 EDO.6: 3 residues within 4Å: Chain A: Q.37, D.161, D.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.161 Water bridges: A:D.162 EDO.7: 4 residues within 4Å: Chain B: K.80, P.81, Y.82, I.83 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.81, B:I.83 Water bridges: B:I.83 EDO.8: 5 residues within 4Å: Chain B: K.11, D.108, V.109, D.110, K.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.109, B:K.134 EDO.9: 4 residues within 4Å: Chain A: E.104 Chain B: R.127, Q.130, R.131 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:R.127 Hydrogen bonds: A:E.104 EDO.10: 5 residues within 4Å: Chain A: S.122, L.123, E.126, T.148 Chain B: P.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.126 EDO.11: 4 residues within 4Å: Chain B: Y.82, Q.84, R.85, K.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.85, B:R.85 EDO.12: 3 residues within 4Å: Chain B: Q.37, D.161, D.162 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.161 Water bridges: B:D.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a protein of unknown function, VPA0982 from Vibrio parahaemolyticus RIMD 2210633. To be Published

Release Date

2007-07-24

Peptides

Protein of unknown function VPA0982: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein of unknown function VPA0982