SMTL ID : 2qis.1

Crystal structure of human farnesyl pyrophosphate synthase T210S mutant bound to risedronate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.124, D.128 Ligands: MG.3, RIS.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.124, A:D.128, H2O.4, H2O.4 MG.2: 2 residues within 4Å: Chain A: D.264 Ligands: RIS.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.264, H2O.5, H2O.6, H2O.7 MG.3: 5 residues within 4Å: Chain A: D.124, D.128, D.195 Ligands: MG.1, RIS.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.124, A:D.128, H2O.4, H2O.5, H2O.6 MG.5: 4 residues within 4Å: Chain B: D.124, D.128 Ligands: MG.7, RIS.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.124, B:D.128, H2O.11, H2O.11 MG.6: 2 residues within 4Å: Chain B: D.264 Ligands: RIS.8 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.264, H2O.12, H2O.12, H2O.13 MG.7: 5 residues within 4Å: Chain B: D.124, D.128, D.195 Ligands: MG.5, RIS.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.124, B:D.128, H2O.11, H2O.12, H2O.12

2 x RIS: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID(Non-covalent)

RIS.4: 13 residues within 4Å: Chain A: L.121, D.124, D.128, R.133, Q.192, K.221, S.222, Q.261, D.264, K.278 Ligands: MG.1, MG.2, MG.3 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.121, A:D.124 Hydrogen bonds: A:R.133, A:R.133, A:Q.261, A:D.264, A:K.278 Water bridges: A:D.128, A:D.128, A:S.130, A:Q.192, A:K.221, A:K.221, A:K.221, A:K.221, A:D.268, A:D.268, A:D.282 RIS.8: 13 residues within 4Å: Chain B: L.121, D.124, D.128, R.133, Q.192, K.221, S.222, Q.261, D.264, K.278 Ligands: MG.5, MG.6, MG.7 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.121, B:D.124 Hydrogen bonds: B:R.133, B:R.133, B:Q.261, B:D.264, B:K.278 Water bridges: B:S.130, B:S.130, B:Q.192, B:K.221, B:K.221, B:K.221, B:K.221, B:D.264, B:D.264, B:K.278, B:D.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, K.L. et al., Crystal structure of human farnesyl pyrophosphate synthase T210S mutant bound to risedronate. To be Published

Release Date

2007-07-24

Peptides

Farnesyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthetase