SMTL ID : 2qiw.1

Crystal structure of a putative phosphoenolpyruvate phosphonomutase (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: T.26, G.47, N.111, Y.186, T.234, F.235, G.236 Ligands: GOL.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.111, A:T.234, A:T.234, A:G.236 Water bridges: A:S.48, A:R.152 SO4.11: 8 residues within 4Å: Chain B: T.26, G.47, N.111, Y.186, T.234, F.235, G.236 Ligands: GOL.14 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.26, B:T.26, B:N.111, B:G.236 Water bridges: B:S.48, B:D.86, B:D.86, B:R.152

1 x UNL: UNKNOWN LIGAND(Non-functional Binders)

UNL.2: 6 residues within 4Å: Chain A: H.49, D.59, R.152, K.157, P.237 Ligands: GOL.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.49, A:R.152, A:K.157 Water bridges: A:S.48, A:R.152, A:R.152

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: P.213, G.216, D.221, L.222 Chain B: Q.250, G.253, W.254 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.222, B:Q.250 Water bridges: A:A.223 GOL.4: 5 residues within 4Å: Chain A: L.21, L.22, V.23, F.41, S.42 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.23, A:S.42, A:G.43 Water bridges: A:L.21, A:S.42 GOL.5: 6 residues within 4Å: Chain A: G.19, L.21, A.226, G.229, V.230, R.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.226 GOL.6: 5 residues within 4Å: Chain A: L.35, E.38 Chain B: A.244, A.245, A.248 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:A.245, B:K.252, B:K.252 Hydrogen bonds: A:E.38 GOL.7: 4 residues within 4Å: Chain A: D.141, G.144, V.145, D.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.146 GOL.8: 3 residues within 4Å: Chain A: G.1, M.2, S.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:S.3, A:S.3 Water bridges: A:D.4 GOL.9: 5 residues within 4Å: Chain A: T.10, S.14, E.17, D.146, R.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.17, A:R.183, A:R.183 GOL.10: 9 residues within 4Å: Chain A: R.152, K.157, Y.186, V.188, T.210, G.236, P.237 Ligands: SO4.1, UNL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.152, A:R.152, A:Y.186 GOL.14: 9 residues within 4Å: Chain B: R.152, K.157, Y.186, V.188, T.210, G.236, P.237 Ligands: SO4.11, CL.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.152, B:K.157, B:Y.186 GOL.15: 5 residues within 4Å: Chain B: S.3, L.5, K.6, A.143, V.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.3 Water bridges: B:L.5, B:A.143 GOL.16: 3 residues within 4Å: Chain B: M.167, Q.195, R.198 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.195, B:R.198 Water bridges: B:D.165, B:E.194

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 2 residues within 4Å: Chain B: H.49 Ligands: GOL.14 Ligand excluded by PLIP

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.13: 1 residues within 4Å: Chain B: V.142 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative PEP phosphonomutase (NP_600288.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 1.80 A resolution. To be published

Release Date

2007-07-17

Peptides

PEP phosphonomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PEP phosphonomutase