SMTL ID : 2qju.1

Crystal Structure of an NSS Homolog with Bound Antidepressant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 4 residues within 4Å: Chain A: L.162, F.163, I.166, I.170 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.163, A:F.163, A:I.166, A:I.170 BOG.2: 8 residues within 4Å: Chain A: P.160, S.161, L.162, Y.165, F.384, H.387, F.391 Ligands: BOG.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.384 BOG.3: 6 residues within 4Å: Chain A: K.159, H.387, L.388, F.391 Ligands: BOG.2, BOG.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.387 Hydrogen bonds: A:K.159 BOG.4: 3 residues within 4Å: Chain A: I.157, F.391 Ligands: BOG.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.157, A:F.391

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: G.16, V.19, G.20, A.347, T.350, S.351 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.350, A:T.350 NA.6: 7 residues within 4Å: Chain A: A.18, V.19, G.20, N.23, T.250, N.282 Ligands: LEU.8 7 PLIP interactions: 4 interactions with chain A, 3 Ligand-Ligand interactions Hydrogen bonds: A:G.20, A:N.23, A:T.250, A:N.282, L.8, L.8, L.8

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: Y.147, S.161, F.163 Ligand excluded by PLIP

1 x LEU: LEUCINE(Non-covalent)

LEU.8: 14 residues within 4Å: Chain A: N.17, A.18, G.20, L.21, G.22, N.23, Y.104, F.249, T.250, S.252, F.255, S.351, I.355 Ligands: NA.6 11 PLIP interactions: 10 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Y.104, A:F.249, A:F.255 Hydrogen bonds: A:A.18, A:G.20, A:G.22, A:N.23, A:Y.104, A:T.250, A:S.252, L.8

1 x DSM: 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE(Non-covalent)

DSM.9: 12 residues within 4Å: Chain A: L.21, L.25, R.26, Q.30, Y.103, I.107, F.249, A.315, F.316, L.396, D.397, D.400 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.21, A:L.25, A:R.26, A:Y.103, A:I.107, A:F.249, A:A.315, A:F.316, A:L.396 Hydrogen bonds: A:D.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Z. et al., LeuT-desipramine structure reveals how antidepressants block neurotransmitter reuptake. Science (2007)

Release Date

2007-08-21

Peptides

Transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transporter