SMTL ID : 2qkb.1

Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain C: R.21, R.22 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.22 Salt bridges: C:R.21, C:R.22 SO4.3: 3 residues within 4Å: Chain D: R.25, R.43, S.152 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.43, D:S.152, D:S.152 Salt bridges: D:R.25

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain C: R.47, R.52, I.107, E.110, D.111 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.47, C:D.111 Water bridges: C:R.47 EDO.4: 6 residues within 4Å: Chain D: R.47, R.52, I.107, N.108, E.110, D.111 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.47, D:D.111 Water bridges: D:R.47, D:E.110, D:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowotny, M. et al., Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription. Mol.Cell (2007)

Release Date

2007-11-13

Peptides

Ribonuclease H1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Ribonuclease H1

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