SMTL ID : 2qll.1

Human liver glycogen phosphorylase- GL complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x GLY- PRO- TYR- TYR: protein targeting to glycogen - GL(Non-covalent)

GLY-PRO-TYR-TYR.1: 13 residues within 4Å: Chain A: Q.72, Q.73, Y.76, Y.156, F.197, R.243, D.307, R.310, R.311, A.314 Chain B: D.43, N.45, V.46 14 PLIP interactions: 2 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:V.46, A:Q.72, A:Y.76, A:R.311, A:A.314 Hydrogen bonds: B:N.45, A:Y.156, A:R.243, A:D.307 Water bridges: A:R.243, A:D.307 Salt bridges: A:R.243, A:R.311 pi-Stacking: A:F.197 GLY-PRO-TYR-TYR.3: 13 residues within 4Å: Chain A: D.43, N.45, V.46 Chain B: Q.72, Q.73, Y.76, Y.156, F.197, R.243, D.307, R.310, R.311, A.314 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:V.46, B:Q.72, B:Y.76, B:R.311, B:A.314 Hydrogen bonds: A:D.43, A:N.45, B:R.243 Water bridges: B:R.243 Salt bridges: B:R.243, B:R.311 pi-Stacking: B:F.197

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.2: 14 residues within 4Å: Chain A: Y.91, G.136, R.139, W.492, K.569, K.575, Y.649, R.650, V.651, A.654, G.676, T.677, G.678, K.681 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.91, A:R.139, A:Y.649, A:T.677 Hydrogen bonds: A:Y.649, A:T.677, A:G.678 Salt bridges: A:K.569, A:K.575 PLP.4: 14 residues within 4Å: Chain B: Y.91, G.136, R.139, W.492, K.569, K.575, Y.649, R.650, V.651, A.654, G.676, T.677, G.678, K.681 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.91, B:R.139, B:Y.649, B:T.677 Hydrogen bonds: B:T.677, B:G.678 Salt bridges: B:K.569, B:K.575

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pautsch, A. et al., Molecular recognition of the protein phosphatase 1 glycogen targeting subunit by glycogen phosphorylase. J.Biol.Chem. (2008)

Release Date

2008-02-19

Peptides

Glycogen phosphorylase, liver form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, liver form

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