SMTL ID : 2qm3.1

Crystal structure of a predicted methyltransferase from Pyrococcus furiosus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain A: A.151, D.182 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.151, A:D.182, H2O.5, H2O.5, H2O.5 CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain B: A.151, D.182 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:A.151, B:D.182, H2O.13, H2O.13, H2O.14 CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 8 residues within 4Å: Chain A: N.315, W.316, G.317, Y.318, A.319, P.334, W.338, Y.339 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.316, A:Y.318, A:W.338, A:Y.339 Hydrogen bonds: A:W.316, A:G.317, A:Y.318, A:A.319 ACY.4: 4 residues within 4Å: Chain A: P.39, V.40, Y.41 Chain B: E.350 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.40 Water bridges: A:K.33, A:K.33 Salt bridges: A:K.33 Hydrophobic interactions: B:E.350 ACY.5: 8 residues within 4Å: Chain A: H.240, I.264, L.267, G.269, T.348, S.352, R.353, G.354 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.348 Hydrogen bonds: A:S.352, A:G.354 Salt bridges: A:H.240 ACY.8: 8 residues within 4Å: Chain B: N.315, W.316, G.317, Y.318, A.319, P.334, W.338, Y.339 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.316, B:Y.318, B:W.338, B:Y.339 Hydrogen bonds: B:W.316, B:G.317, B:Y.318, B:A.319 ACY.9: 4 residues within 4Å: Chain A: E.350 Chain B: P.39, V.40, Y.41 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.40 Water bridges: B:K.33, B:K.33 Salt bridges: B:K.33 Hydrophobic interactions: A:E.350 ACY.10: 8 residues within 4Å: Chain B: H.240, I.264, L.267, G.269, T.348, S.352, R.353, G.354 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.348 Hydrogen bonds: B:S.352, B:G.354 Salt bridges: B:H.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a predicted methyltransferase from Pyrococcus furiosus. TO BE PUBLISHED

Release Date

2007-09-11

Peptides

Predicted methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Predicted methyltransferase