SMTL ID : 2qnc.1

Crystal structure of T4 Endonuclease VII N62D mutant in complex with a DNA Holliday junction

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain D: C.12, C.13 Chain F: D.40, H.41, R.54, D.62 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.40, H2O.1 MG.3: 6 residues within 4Å: Chain B: C.12, T.13 Chain E: D.40, R.54, D.62, E.65 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.40, E:D.62, H2O.1

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain E: C.23, C.26, C.58, C.61 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.23, E:C.26, E:C.58, E:C.61 ZN.4: 4 residues within 4Å: Chain F: C.23, C.26, C.58, C.61 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.23, F:C.26, F:C.58, F:C.61

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 1 residues within 4Å: Chain F: G.79 No protein-ligand interaction detected (PLIP) EDO.6: 1 residues within 4Å: Chain F: Y.135 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biertumpfel, C. et al., Crystal structure of T4 endonuclease VII resolving a Holliday junction. Nature (2007)

Release Date

2008-01-29

Peptides

Recombination endonuclease VII: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
A

F
B

Recombination endonuclease VII

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