SMTL ID : 2qne.1

Crystal structure of putative methyltransferase (ZP_00558420.1) from Desulfitobacterium hafniense Y51 at 2.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 10 residues within 4Å: Chain A: Y.133, G.150, G.151, T.152, M.168, L.169, S.172, M.181, G.182, S.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.133, A:S.172, A:S.172 EDO.2: 6 residues within 4Å: Chain A: L.216, N.218, L.248, T.291, R.328, H.364 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.218, A:T.291, A:R.328, A:R.328 EDO.3: 7 residues within 4Å: Chain A: G.252, S.295, D.296, M.297 Chain B: L.419, T.424, H.428 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.428, A:S.295 EDO.4: 3 residues within 4Å: Chain A: Q.167, Y.170, Q.482 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.167, A:Q.167 EDO.5: 5 residues within 4Å: Chain A: E.62, E.76, F.77, S.80, K.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.76, A:S.80 EDO.6: 4 residues within 4Å: Chain A: R.94, N.95, L.473, D.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.94, A:D.474 EDO.7: 3 residues within 4Å: Chain A: G.114, F.372, M.373 No protein-ligand interaction detected (PLIP) EDO.8: 6 residues within 4Å: Chain B: L.216, N.218, L.248, T.291, R.328, H.364 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.218, B:T.291, B:R.328, B:R.328 EDO.9: 4 residues within 4Å: Chain B: L.302, Y.371, F.372, M.373 No protein-ligand interaction detected (PLIP) EDO.10: 9 residues within 4Å: Chain B: S.290, T.291, S.292, C.309, F.312, I.313, S.329, G.330, L.333 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.290, B:G.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative methyltransferase (ZP_00558420.1) from Desulfitobacterium hafniense Y51 at 2.30 A resolution. To be published

Release Date

2007-08-14

Peptides

Putative methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative methyltransferase