SMTL ID : 2qny.1

Crystal structure of the complex between the A246F mutant of mycobacterium beta-ketoacyl-acyl carrier protein synthase III (FABH) and SS-(2-hydroxyethyl) O-decyl ester carbono(dithioperoxoic) acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x DFD: DECYL FORMATE(Covalent)

DFD.1: 16 residues within 4Å: Chain A: N.91, C.122, L.152, T.155, I.199, Q.201, P.217, F.218, V.219, H.258, F.260, N.289, S.291, A.321 Chain B: Q.96, T.97 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:T.97, A:N.91, A:L.152, A:Q.201, A:Q.201, A:V.219, A:V.219, A:A.321 Hydrogen bonds: A:N.289 DFD.4: 16 residues within 4Å: Chain A: Q.96, T.97 Chain B: N.91, G.121, C.122, L.152, T.155, I.199, Q.201, W.205, F.218, V.219, F.260, N.289, S.291, A.321 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:N.91, B:L.152, B:T.155, B:Q.201, B:Q.201, B:W.205, B:V.219, B:V.219, B:A.321 Hydrogen bonds: B:N.289

3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: C.33, W.42, I.43, R.161, F.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.161 BME.3: 4 residues within 4Å: Chain A: I.32, M.158, C.164, F.165 No protein-ligand interaction detected (PLIP) BME.5: 4 residues within 4Å: Chain B: C.33, W.42, R.161, F.165 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sachdeva, S. et al., Separate Entrance and Exit Portals for Ligand Traffic in Mycobacterium tuberculosis FabH. Chem.Biol. (2008)

Release Date

2008-05-06

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 3

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