SMTL ID : 2qqc.2 (1 other biounit)

E109Q mutant of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-3-3-mer

Ligands

3 x AG2: AGMATINE(Non-covalent)

AG2.1: 13 residues within 4Å: Chain A: L.32, F.35, D.36, L.39, G.45, V.47 Chain C: S.53 Chain D: X.1, I.2, I.55, M.56, Q.57, R.82 7 PLIP interactions: 2 interactions with chain D, 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: D:Q.57, D:R.82, A:G.45, C:S.53 Hydrophobic interactions: A:L.32, A:F.35 Salt bridges: A:D.36 AG2.2: 13 residues within 4Å: Chain C: L.32, F.35, D.36, L.39, G.45, V.47 Chain E: S.53 Chain F: X.1, I.2, I.55, M.56, Q.57, R.82 6 PLIP interactions: 1 interactions with chain E, 3 interactions with chain C, 2 interactions with chain F Hydrogen bonds: E:S.53, C:G.45, F:Q.57, F:R.82 Hydrophobic interactions: C:D.36 Salt bridges: C:D.36 AG2.4: 13 residues within 4Å: Chain A: S.53 Chain B: X.1, I.2, I.55, M.56, Q.57, R.82 Chain E: L.32, F.35, D.36, L.39, G.45, V.47 7 PLIP interactions: 3 interactions with chain E, 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: E:D.36 Hydrogen bonds: E:G.45, B:Q.57, B:Q.57, B:R.82, A:S.53 Salt bridges: E:D.36

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 4 residues within 4Å: Chain C: L.32, F.35 Chain D: Y.27 Chain E: S.53 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:L.32 Hydrogen bonds: D:Y.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soriano, E.V. et al., Structures of the N47A and E109Q mutant proteins of pyruvoyl-dependent arginine decarboxylase from Methanococcus jannaschii. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-03-18

Peptides

Pyruvoyl-dependent arginine decarboxylase subunit beta: ACE
Pyruvoyl-dependent arginine decarboxylase subunit alpha: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

Pyruvoyl-dependent arginine decarboxylase subunit beta

Pyruvoyl-dependent arginine decarboxylase subunit alpha

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