SMTL ID : 2qqk.1 (1 other biounit)

Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.128, N.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.128, A:N.130 NAG.2: 1 residues within 4Å: Chain A: N.135 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: S.128, N.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.128, B:N.130 NAG.4: 1 residues within 4Å: Chain B: N.135 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleton, B.A. et al., Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding. Embo J. (2007)

Release Date

2007-11-20

Peptides

Neuropilin-2: AB
Antibody Heavy Chain: CE
Antibody Light Chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
H

E
H

D
L

F
L

Neuropilin-2

Antibody Heavy Chain

Antibody Light Chain

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