SMTL ID : 2qqo.1 (2 other biounits)

Crystal Structure of the a2b1b2 Domains from Human Neuropilin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.56, D.70, D.111, A.113, V.114 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.56, A:D.70, A:D.111, A:A.113, H2O.6

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: M.197, C.286, R.287, V.288, A.291, R.421 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.287, A:A.291, A:R.421, A:R.421

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 5 residues within 4Å: Chain A: Y.158, W.163, T.178, Y.215, I.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleton, B.A. et al., Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding. Embo J. (2007)

Release Date

2007-11-20

Peptides

Neuropilin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-2

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