SMTL ID : 2qqw.1

Crystal structure of a cell-wall invertase (D23A) from Arabidopsis thaliana in complex with sucrose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN.1: 12 residues within 4Å: Chain A: K.238, K.273, Y.275, W.293, N.295, E.296, S.297, Q.392, L.393, S.396, D.457, T.459 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.459

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: N.139, S.141, S.142, K.164, I.165 No protein-ligand interaction detected (PLIP)

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.3: 13 residues within 4Å: Chain A: N.18, Q.35, W.43, W.78, S.79, R.144, D.145, E.199, D.235, K.238, Y.275, A.276, W.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18, A:W.43, A:S.79, A:D.145, A:E.199, A:D.235, A:K.238

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.112, S.114 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 1 residues within 4Å: Chain A: H.470 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.470 ZN.6: 2 residues within 4Å: Chain A: H.190, D.192 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.190, A:D.192, A:D.192 ZN.7: 1 residues within 4Å: Chain A: H.239 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain A: D.60 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.60, A:D.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammens, W. et al., Crystal structures of Arabidopsis thaliana cell-wall invertase mutants in complex with sucrose. J.Mol.Biol. (2008)

Release Date

2008-04-22

Peptides

Beta-fructofuranosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-fructofuranosidase