- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.45 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
UDP.2: 16 residues within 4Å:- Chain A: N.49, A.51, A.52, G.53, K.54, S.55, T.56, E.147, R.208, L.211, R.212, D.261, F.262, K.263
- Ligands: MG.1, D5M.3
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:T.56, A:F.262
- Hydrogen bonds: A:N.49, A:A.51, A:A.52, A:G.53, A:K.54, A:S.55, A:T.56, A:T.56, A:T.56, A:D.261, A:F.262, A:K.263
- Salt bridges: A:K.54, A:R.212, A:R.212
- pi-Cation interactions: A:R.208
UDP.5: 16 residues within 4Å:- Chain B: N.49, A.51, A.52, G.53, K.54, S.55, T.56, E.147, R.208, L.211, R.212, D.261, F.262, K.263
- Ligands: MG.4, D5M.6
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:F.262
- Hydrogen bonds: B:N.49, B:A.51, B:A.52, B:G.53, B:K.54, B:S.55, B:S.55, B:T.56, B:T.56, B:T.56, B:D.261, B:F.262, B:K.263
- Salt bridges: B:K.54, B:R.212, B:R.212
- pi-Cation interactions: B:R.208
- 2 x D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
D5M.3: 20 residues within 4Å:- Chain A: N.49, I.50, A.51, K.54, E.73, W.78, L.102, M.105, Y.106, F.116, Q.117, E.147, R.148, D.153, F.157, R.212, R.214, E.217
- Ligands: MG.1, UDP.2
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:I.50
- Hydrogen bonds: A:A.51, A:E.73, A:Y.106, A:Q.117, A:Q.117, A:E.147, A:R.214, A:E.217, A:E.217
- Salt bridges: A:K.54, A:R.148, A:R.212, A:R.214
- pi-Stacking: A:W.78, A:F.157, A:F.157
D5M.6: 20 residues within 4Å:- Chain B: N.49, I.50, A.51, K.54, E.73, W.78, L.102, M.105, Y.106, F.116, Q.117, E.147, R.148, D.153, F.157, R.212, R.214, E.217
- Ligands: MG.4, UDP.5
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:I.50
- Hydrogen bonds: B:A.51, B:E.73, B:Q.117, B:Q.117, B:R.124, B:D.153, B:R.214, B:E.217
- Salt bridges: B:K.54, B:R.148, B:R.212, B:R.214
- pi-Stacking: B:W.78, B:F.157, B:F.157
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soriano, E.V. et al., Structures of human deoxycytidine kinase product complexes. Acta Crystallogr.,Sect.D (2007)
- Release Date
- 2007-12-11
- Peptides
- Deoxycytidine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.45 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soriano, E.V. et al., Structures of human deoxycytidine kinase product complexes. Acta Crystallogr.,Sect.D (2007)
- Release Date
- 2007-12-11
- Peptides
- Deoxycytidine kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D