SMTL ID : 2qrv.2 (1 other biounit)

Structure of Dnmt3a-Dnmt3L C-terminal domain complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: F.23, D.24, G.25, I.26, T.28, S.46, E.47, V.48, C.49, D.69, V.70, R.71, G.90, P.92, L.113, R.274, S.275, W.276 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:I.26, A:T.28, A:V.48, A:C.49, A:D.69, A:V.70, A:R.71, A:W.276, A:W.276 pi-Stacking: A:F.23, A:F.23 SAH.2: 17 residues within 4Å: Chain D: F.23, D.24, G.25, I.26, T.28, S.46, E.47, V.48, C.49, S.52, D.69, V.70, R.71, G.90, R.274, S.275, W.276 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:R.274 Hydrogen bonds: D:I.26, D:T.28, D:S.52, D:D.69, D:D.69, D:V.70, D:R.274, D:W.276, D:W.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, D. et al., Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature (2007)

Release Date

2007-12-04

Peptides

DNA (cytosine-5)-methyltransferase 3A: AD
DNA (cytosine-5)-methyltransferase 3-like: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

D
H

B
F

C
G

DNA (cytosine-5)-methyltransferase 3A

DNA (cytosine-5)-methyltransferase 3-like

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