SMTL ID : 2qrz.1

Cdc42 bound to GMP-PCP: Induced Fit by Effector is Required

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.17, D.57 Ligands: GCP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.17, H2O.1, H2O.1, H2O.3 MG.4: 2 residues within 4Å: Chain B: T.17 Ligands: GCP.5 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.17, H2O.3, H2O.3, H2O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.163, G.164 Chain B: G.164 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.164, A:G.164 Salt bridges: B:K.163

2 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.3: 20 residues within 4Å: Chain A: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, F.28, V.33, F.37, G.60, Q.61, Q.116, D.118, L.119, S.158, A.159, L.160 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.13, A:V.14, A:G.15, A:K.16, A:K.16, A:T.17, A:C.18, A:T.58, A:G.60, A:Q.61, A:Q.61, A:Q.116, A:S.158, A:A.159, A:L.160 Water bridges: A:T.17, A:Q.116 Salt bridges: A:D.118 pi-Stacking: A:F.28, A:F.28 GCP.5: 19 residues within 4Å: Chain B: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, F.28, T.58, G.60, Q.61, Q.116, D.118, L.119, S.158, A.159, L.160 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:A.13, B:V.14, B:G.15, B:K.16, B:K.16, B:T.17, B:C.18, B:G.60, B:Q.61, B:Q.61, B:Q.61, B:A.159, B:L.160 Water bridges: B:T.17, B:Q.116 Salt bridges: B:D.118 pi-Stacking: B:F.28, B:F.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phillips, M.J. et al., Effector Proteins Exert an Important Influence on the Signaling-active State of the Small GTPase Cdc42. J.Biol.Chem. (2008)

Release Date

2008-03-18

Peptides

Cell division control protein 42 homolog precursor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division control protein 42 homolog precursor