SMTL ID : 2qsy.1

Human nicotinamide riboside kinase 1 in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.35 Ligands: ADP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.35, H2O.1, H2O.1, H2O.1, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 15 residues within 4Å: Chain A: V.29, N.31, S.32, G.33, K.34, T.35, T.36, R.146, R.150, G.188, K.190, S.191, E.192, L.195 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.31, A:S.32, A:G.33, A:K.34, A:T.35, A:T.36, A:T.36, A:R.146, A:R.146, A:K.190 Water bridges: A:T.30, A:T.30, A:K.34, A:T.35, A:T.35, A:D.54, A:E.116, A:R.150, A:R.150, A:R.150 Salt bridges: A:K.34, A:R.150, A:R.150 pi-Cation interactions: A:R.146

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 4 residues within 4Å: Chain A: T.36, L.37, N.40, E.192 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: L.71, S.157, Y.160 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: K.58, L.76, E.77, L.79 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: D.127, T.128, W.130 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: L.186, D.187, K.190, Q.198 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tempel, W. et al., Nicotinamide Riboside Kinase Structures Reveal New Pathways to NAD(+). Plos Biol. (2007)

Release Date

2007-08-14

Peptides

Nicotinamide riboside kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide riboside kinase 1

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