SMTL ID : 2qt1.1

Human nicotinamide riboside kinase 1 in complex with nicotinamide riboside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: N.31, S.32, G.33, K.34, T.35, R.150 Ligands: UNX.3, UNX.4, UNX.5, UNX.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.31, A:S.32, A:G.33, A:K.34, A:T.35, A:T.35 Water bridges: A:T.36 Salt bridges: A:K.34, A:R.150

1 x NNR: Nicotinamide riboside(Non-covalent)

NNR.2: 12 residues within 4Å: Chain A: D.54, F.57, Y.73, D.74, F.118, R.147, Y.152, Q.153 Ligands: UNX.3, UNX.4, UNX.5, UNX.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.57 Hydrogen bonds: A:D.54, A:D.54, A:D.74, A:D.74, A:R.147, A:R.147 pi-Stacking: A:Y.73

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 9 residues within 4Å: Chain A: T.30, N.31, R.150, Y.152 Ligands: PO4.1, NNR.2, UNX.4, UNX.5, UNX.6 No protein-ligand interaction detected (PLIP) UNX.4: 8 residues within 4Å: Chain A: T.30, D.54, R.150 Ligands: PO4.1, NNR.2, UNX.3, UNX.5, UNX.6 No protein-ligand interaction detected (PLIP) UNX.5: 9 residues within 4Å: Chain A: T.30, N.31, K.34, F.118 Ligands: PO4.1, NNR.2, UNX.3, UNX.4, UNX.6 No protein-ligand interaction detected (PLIP) UNX.6: 7 residues within 4Å: Chain A: D.54, R.150 Ligands: PO4.1, NNR.2, UNX.3, UNX.4, UNX.5 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: T.137, I.138 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: R.132, S.133, Y.134, V.184 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: D.194 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tempel, W. et al., Nicotinamide Riboside Kinase Structures Reveal New Pathways to NAD(+). Plos Biol. (2007)

Release Date

2007-08-14

Peptides

Nicotinamide riboside kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide riboside kinase 1

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