SMTL ID : 2qtk.1 (1 other biounit)

Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

12 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 5 residues within 4Å: Chain A: N.17, W.37, L.382, V.384 Ligands: C8E.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17 C8E.2: 7 residues within 4Å: Chain A: V.323, Y.325, W.342, R.344, V.346 Ligands: C8E.3, C8E.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.323, A:V.346 Hydrogen bonds: A:R.344 C8E.3: 9 residues within 4Å: Chain A: Y.307, G.321, M.322, V.323, R.344, V.346, L.348, H.366 Ligands: C8E.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.307 C8E.4: 6 residues within 4Å: Chain A: H.260, F.262, Y.307, V.323 Ligands: C8E.2, C8E.11 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.262 C8E.5: 4 residues within 4Å: Chain A: L.108, F.135, V.137, S.139 No protein-ligand interaction detected (PLIP) C8E.6: 2 residues within 4Å: Chain A: F.64, V.95 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.64, A:V.95 C8E.7: 4 residues within 4Å: Chain A: V.219, W.222, L.224, A.255 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.219, A:W.222, A:L.224, A:A.255 C8E.8: 6 residues within 4Å: Chain A: A.211, L.228, G.229, V.249, Y.250, L.266 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.211, A:L.228 C8E.9: 4 residues within 4Å: Chain A: N.17, W.37, Q.39 Ligands: C8E.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.37, A:Q.39 C8E.10: 2 residues within 4Å: Chain A: L.364 Ligands: C8E.12 No protein-ligand interaction detected (PLIP) C8E.11: 4 residues within 4Å: Chain A: F.262, Y.307, V.323 Ligands: C8E.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.262 C8E.12: 3 residues within 4Å: Chain A: Y.350, V.352 Ligands: C8E.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.350, A:V.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswas, S. et al., Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa. Structure (2008)

Release Date

2008-06-24

Peptides

Probable porin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable porin

Related Entries With Identical Sequence