SMTL ID : 2qtq.1 (1 other biounit)

Crystal structure of a predicted dna-binding transcriptional regulator (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 3 residues within 4Å: Chain A: V.34, V.35, R.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.35 Water bridges: A:R.113, A:R.113 NO3.12: 7 residues within 4Å: Chain A: T.166, R.173, F.205 Chain B: T.166, R.173, F.205, I.206 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Water bridges: B:R.173, B:R.173, B:R.173, A:T.166 Hydrogen bonds: A:R.173, A:R.173

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: S.43, G.47, L.48, N.49 Ligand excluded by PLIP EDO.3: 2 residues within 4Å: Chain A: D.123, E.124 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: N.11, L.12, T.14, L.52, Y.55, Y.56 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: L.20, R.45, S.46 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: H.201, F.205 Chain B: L.162, F.163, T.166 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: Q.161 Chain B: F.185 Ligands: EDO.9 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: D.36, I.37, S.38, K.60 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: N.143, Q.161 Ligands: EDO.7 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: M.72, I.75, Y.105, N.112, L.115, Y.164, T.168 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: S.78, A.81, R.96, K.100 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain B: N.159, Q.161 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: D.103, Y.106, D.107, R.199 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain B: G.47, L.48, N.49 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: K.65, A.66, D.69, R.129 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain B: D.36, S.38 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain B: L.39, K.54, K.60 Ligand excluded by PLIP EDO.19: 1 residues within 4Å: Chain B: G.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of predicted DNA-binding transcriptional regulator (YP_496351.1) from Novosphingobium aromaticivorans DSM 12444 at 1.85 A resolution. To be published

Release Date

2007-08-21

Peptides

Transcriptional regulator, TetR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator, TetR family

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