SMTL ID : 2qub.1 (5 other biounits)

Crystal structure of extracellular lipase LipA from Serratia marcescens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: G.493, G.495, D.497, G.510, N.511, A.512, D.515 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.493, A:G.495, A:D.497, A:G.510, A:A.512, A:D.515 CA.2: 6 residues within 4Å: Chain A: G.530, S.531, G.532, D.534, F.551, D.554 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.530, A:G.532, A:D.534, A:F.551, A:D.554, H2O.4 CA.3: 8 residues within 4Å: Chain A: N.511, A.512, G.513, D.515, G.529, G.530, S.531, D.534 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.511, A:G.513, A:D.515, A:G.529, A:S.531 CA.4: 6 residues within 4Å: Chain A: G.386, G.388, D.390, D.403, G.405, N.408 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.386, A:G.388, A:D.390, A:D.403, A:G.405 CA.5: 8 residues within 4Å: Chain A: R.395, D.396, G.397, D.399, G.412, G.413, K.414, N.417 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.395, A:G.397, A:D.399, A:G.412, A:K.414 CA.6: 7 residues within 4Å: Chain A: S.377, G.379, D.381, G.394, R.395, D.396, D.399 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.377, A:G.379, A:D.381, A:G.394, A:D.396 CA.7: 4 residues within 4Å: Chain A: E.256, D.278, N.286, N.287 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.256, A:D.278, A:N.286, H2O.1, H2O.1 CA.8: 5 residues within 4Å: Chain A: T.120, Q.122, S.146, D.155, D.159 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.120, A:S.146, A:D.155, A:D.159, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meier, R. et al., A calcium-gated lid and a large beta-roll sandwich are revealed by the crystal structure of extracellular lipase from Serratia marcescens. J.Biol.Chem. (2007)

Release Date

2007-08-28

Peptides

Extracellular lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracellular lipase

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